R90393

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R90393

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90393

Determination of introduced cDNA(s)

  • J013120A20 - Rice Full-length cDNAs - Original: J013120A20

    full reading [+] show sequence

    Nucleotide sequence: J013120A20 - full reading 
    AAAAAAAACG TACCCTTGTG ACTACACCCG CTTCGCTTCC TCCCCTCTCT 
    AAGCCGGGGA AGCTAAGCCA TGGCGTCCGT CACCGCCCGC ACCCCGGTCG 
    CAGCCCTCCG CTCGTCGGCG TCGCTCAAGT CTACCTTCCT AGGGCAATCC 
    TCCACCCGCC TCGCCCGCGC ACCGACTACG AGGCGTAATG TTCGGGCGGA 
    GGCCAAGGGA GAGTGGCTCC CCGGCCTCCC TTCTCCCACC TACCTCAACG 
    GCAGCTTGCC AGGCGATAAC GGGTTCGACC CGTTGGGTCT GGCGGAGGAC 
    CCGGAGAACC TGCGGTGGTT CGTGCAGGCG GAGCTGGTGA ACGGGCGGTG 
    GGCGATGCTG GGGGTGGCCG GGATGCTGCT GCCTGAGGTG CTGACGAAGA 
    TCGGGTTGAT CGACGCGCCG CAGTGGTACG ACGCCGGCAA GGCCACCTAC 
    TTCGCGTCGT CGTCGACGCT GTTCGTCATC GAGTTCATCC TGTTCCACTA 
    CGTGGAGATC CGGCGGTGGC AGGACATCAA GAACCCTGGC TGCGTCAACC 
    AGGACCCCAT CTTCAAGAGC TACAGCCTCC CGCCGCACGA GTGCGGCTAC 
    CCCGGCAGCG TCTTCAACCC CCTCAACTTC GAGCCCACCC TCGAGGCCAA 
    GGAGAAGGAG CTCGCCAACG GGAGGCTGGC GATGCTGGCG TTCTTGGGGT 
    TCCTGGTGCA GCACAACGTG ACGCAGAAGG GGCCCTTCGA CAACCTGCTG 
    CAGCACCTGT CTGACCCGTG GCACAACACC ATCATCCAGA CGCTGTCAGG 
    CTGAGCGTGT GATCGATTTC ATCAGGGCCA GGGCATCTCA AGGAGCTTGA 
    TGAGTTCAGG CTGGTGAAAC CGATGATTGG GCGATGGAAG ATGTTCTCTT 
    CTTGTTTCTT CTTTTTTTTT TTGTGGAGTA TGCATGTATA AGATGTTAAT 
    GAATTGGGGG GAGGAGAGAG AGAGAGATGG ATGTGATGAG ATTCAGACTT 
    ACTGTGTGTG TTGTGGTAAT TGTTTCCTGC ATGCATGGAT CTGGATGCAT 
    GGGTGAGGGG GTGAGTTGAG TGGTGAATTT CTGATGTACA GTACTACAGG 
    GGGATAAACT ATCTCATGGT AGCAGCAGTG TTCTAGCT

    Gene models with high sequence identity

    1. AT3G47470.1 [+] show detail - light-harvesting chlorophyll-protein complex I subunit A4
      E-value: 1e-103; Score: 373.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Chlorophyll A-B binding protein 3.9e-107
    HMMPfam Chloroa_b-bind 6.3e-46
    superfamily Chlorophyll a-b binding protein 5.9e-62

    See the detailed result >

    AT3G47470.1

    Model type
    Protein coding
    Short Description
    light-harvesting chlorophyll-protein complex I subunit A4
    Curator Summary
    Encodes a chlorophyll a/b-binding protein that is more similar to the PSI Cab proteins than the PSII cab proteins. The predicted protein is about 20 amino acids shorter than most known Cab proteins.
    Computational Description
    light-harvesting chlorophyll-protein complex I subunit A4 (LHCA4); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to karrikin, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 2 (TAIR:AT3G61470.1); Has 2336 Blast hits to 2249 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1967; Viruses - 0; Other Eukaryotes - 366 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR