R90376

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: R90376

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • present in greater numbers in organism (PATO:0000470)
    (Stem::Number::many)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: R90376

Determination of introduced cDNA(s)

  • J033071L17 - Rice Full-length cDNAs - Original: J033071L17

    full reading [+] show sequence

    Nucleotide sequence: J033071L17 - full reading 
    GAAGTGCTAG CTAGCTAGCA AAAGACAACT CAAGCCAAAA CCATCTCAGA 
    GCTTCAGAGA GGAAGACAAT GGCCGGTGGA GGAGATGAGC TGAAGCTGCT 
    GGGGATGTGG GCGAGCCCGT TCGCGCTGCG AGCGAAGCTC GCGCTCAGCT 
    TCAAGGGCCT GAGCTACGAG TACGTCGAGG AGGATCTCAA GAACAAGAGC 
    GAGCTGCTTC TCACCTCCAA CCCGGTGCAC AAGAAGGTAC CCGTGCTCAT 
    CCACAACGGC AAGCCCGTCT GCGAGTCGCA GGTCATCGTG CAGTACATCG 
    ACGAGGCGTT CCCCGACGCC GGCGTTCCTC TCCTCCCATC CGACCCCTAC 
    GACCGTGCCG TCGCTCGCTT CTGGGCCGCC TACATCGACG ACAAGCTGTT 
    GAAGTCATGG CTGCAGGCGT CGATGTGCAA GACGGAGCAG GAGAAGGCGG 
    CGGCGATGAA GGAGACGTTC GCGGCGGTGG CGAACCTGGA GGCGGCGTTC 
    AAGGAGTGCT CCAAGGGGAA GCCCTTCTTC GGCGGCGACG CCGTCGGGTA 
    CGTGGACGTC ACGCTCGGCG CCGTGGTCGG GTTTGTGCGC GTCGGTGAAG 
    CCGTGCACGG GATGAGGCTG TTCGATGCGA GCCGGAGCCC GCTCCTTGAC 
    GCGTGGCTGG ACCGCTTCGC CGCGCTGGAC GCTGCCAAGG CGGTGTTGCC 
    GGACACCGGT AGGCTGGCCG AGTACGCCAA GATGAAGCAG GCAGAGTGGG 
    CAGCAGCTGC CACCAACTGA GCCAGCATGG CCACGTCTGG TACTCTCGTG 
    GGGAGATGAA GTTGGTGTTG GTGTGCCACC CGTACCGTAC GTAGCTAGTC 
    CTGTCACACG ATGTGACGAC TGTGTGAACT TTGCTACTAT ACGCAATAAA 
    ATTGTGAAGT CGTTAAGTTT TCGTAAGT

    Gene models with high sequence identity

    1. AT1G10370.1 [+] show detail - Glutathione S-transferase family protein
      E-value: 6e-57; Score: 218.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glutathione S-transferase, N-terminal 2.5e-12
    HMMPfam Glutathione S-transferase, C-terminal 4.5e-06
    Coil coiled-coil 0
    HMMPanther GLUTATHIONE S-TRANSFERASE 1.1e-109
    HMMPanther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, 1.1e-109
    superfamily Glutathione S-transferase, C-terminal-like 4.9e-43
    superfamily Thioredoxin-like fold 2.2e-25
    Gene3D Thioredoxin fold 5.7e-20
    Gene3D Glutathione S-transferase, C-terminal-like 2.9e-48
    ProfileScan Glutathione S-transferase, N-terminal 22.287
    ProfileScan Glutathione S-transferase/chloride channel, C-terminal 17.421

    See the detailed result >

    AT1G10370.1

    Model type
    Protein coding
    Short Description
    Glutathione S-transferase family protein
    Computational Description
    EARLY-RESPONSIVE TO DEHYDRATION 9 (ERD9); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: response to water deprivation, response to karrikin, toxin catabolic process; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase TAU 18 (TAIR:AT1G10360.1); Has 6064 Blast hits to 6029 proteins in 1096 species: Archae - 0; Bacteria - 2896; Metazoa - 397; Fungi - 130; Plants - 2065; Viruses - 0; Other Eukaryotes - 576 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR