K46525

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small)
	rosette leaf (PO:0000014)	dark green (PATO:0001249) (Rosette leaf::Color::dark)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short)
	flower (PO:0009046)	abnormal (PATO:0000460) (Flower::Others)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Shape::zigzag) abnormal (PATO:0000460) (Stem::Others)
T2
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small) decreased width (PATO:0000599) (Cauline leaf::Shape::narrow)
	rosette leaf (PO:0000014)	dark green (PATO:0001249) (Rosette leaf::Color::dark)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short)
	petal (PO:0009032)	abnormal (PATO:0000460) (Flower::Shape::petal)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) desaturated green (PATO:0001272) (Stem::Color::pale) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

UV signal::Others::positive

Original: K46525

Determination of introduced cDNA(s)

J013134A03 - Rice Full-length cDNAs - Original: J013134A03

full reading [+] show sequence

GAGGGCTTTG CTCTGGTCTT GCAAGTTAGG TTAGTGATTA GTAGCAGCAG 
AAAGAGTGGA AGATTTAGAG GATAAGGGAT AGTTTGGTCA TGTCGGATAC 
AGCCTTGTCG GGCGCGCCGC CGGCGGCGAG GTCGGAGGAT TCGTGGAGTC 
AGCAGCAGAG CTACAACTTC AGCGGGCGCG TGCTGCTCAC GGCCGTCGTG 
ATCCTGTTCG TGATCGCCGT CGTCTTCGCC GTCACCCGCG TCTTGCTGTA 
CTACCTCGTG GTGCGGCCCG GCGGTGGCGG CGGAGGCCGT CGTCGTGGCG 
GCCTGGCAGG GGGGATCTTG CGGTCGTTGA ACTCGCTCGG CGTGAGCGGT 
CGCCGCGGGC TGGACGCGTC CGCGCTCGCC GCGCTGCCGG TCACCGCGTA 
CCGGAAGAAC GGCGGCGGGG GCGGTGGTGG GGAGGGCTCC AACCGCGGCG 
GGCCTGGCGC CACCGCCGCC GACTGCGCCG TGTGTCTGTC GGAGCTCGCC 
GACGGCGAGA AGGTGCGGGA GCTGCCCAAC TGCCGGCACG TCTTCCACGT 
GGAGTGCGTC GACGCGTGGC TGCGCTCCAG GACCACGTGC CCGCTCTGCC 
GGGCCGAGGC GGAAGTACCC AAGGCGAGGG CTTCGGCGGC GGCGACGGCG 
ACGGCGCAGT CGTCGTCGTC GCTCGGTGAC GGAGGAATTA CCGTGGTCGT 
GACCATACAC GGCGGCTCTG ACGAAGCCGG TGGCAGGTCA ACGGCGTTGA 
CTGGTCAACC GGGATCCTCG AACTCTCCTA GCTGCGAGGC TGCAAGGAAT 
TGAGGATCGA CGATGACGAC GAACTTCAGA GTTGTGATGT GATTCTTTAT 
TTTGCTATAG GAGCTCTATC AAGTGTAGAT TGTGAAACGC ATTTGTGATG 
TGATTCTTTA TTTCTTTCCC ATATATAGCT AAGAAACAAC TGCATAATAC 
ATTCCCCGC

Gene models with high sequence identity

AT2G42360.1 [+] show detail - RING/U-box superfamily protein
E-value: 3e-16; Score: 82.80

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Zinc finger, C3HC4 RING-type	1.3e-07
ProfileScan	Zinc finger, RING-type	12.725
HMMPanther	RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW D	1.9e-16
HMMSmart	Zinc finger, RING-CH-type	0.0077
HMMSmart	Zinc finger, RING-type	5.3e-07
Gene3D	no description	8.4e-15
superfamily	RING/U-box	2.2e-16

See the detailed result >

AT2G42360.1

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G42350.1); Has 8862 Blast hits to 8837 proteins in 292 species: Archae - 0; Bacteria - 0; Metazoa - 2202; Fungi - 673; Plants - 4781; Viruses - 60; Other Eukaryotes - 1146 (source: NCBI BLink).
Link: InterPro Scan - TAIR