K46019

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) desaturated green (PATO:0001272) (Stem::Color::pale) abnormal (PATO:0000460) (Stem::Others)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)
T2
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	present in fewer numbers in organism (PATO:0001997) (Cauline leaf::Number::few)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) dark green (PATO:0001249) (Rosette leaf::Color::dark) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many) abnormal (PATO:0000460) (Rosette leaf::Others)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short)
	seed (PO:0009010)	increased length (PATO:0000573) (Seed::Shape::long)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Others)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K46019

Determination of introduced cDNA(s)

J023082N23 - Rice Full-length cDNAs - Original: J023082N23

full reading [+] show sequence

GGGGTCCAAA AGAGCTCCAC CGCAATGCAA CCAATCCCTT GTCTCTCCGT 
CGAGGATCAG TAATGCTTCA CGACGATTGC ATCGGTGAGG GACTCTCAAG 
CCCCATAGCT GCTCAAATTC TTGATTTCTG CGATGACGGC CTAGGTGATG 
ATCTCTTCGC TGCAGTGGCC ACTACCTCCG AGCAATTTGC AGCCTCTTCC 
GAGGATGGTT CATCGTCGTC CACAGCCACA CCTCCCCTCT GCAGCAACAG 
CAATGACATC ACAGCTGTTG CAGACACAGC TTTCTCCCCA TTACTCTCCT 
TCGACTCCAC CCTCTCAGCC TTCCTTGAGC AAGAGCAAAA CCCTGACCAG 
GACACCAAGC TACTTCCCTC CATTGATGAA ACCTTTACTG CACCAGCATA 
CTATCCAGCT GCCACCGAGG CCAACATAGA ACAATTCAGC CAAATAATGG 
TTCCAGAGCA TACAGATGCA CCAATGCCCC CAATGCAAAC AAACAGGACT 
GCCAATGCCT TGCTGCCTCT AGCTTCAGGG TATGACGACG AGTGTTTCAC 
AGCAGCACTA GCTGGAGGGT ACATGGGTCT GGATGGAACT CTGTATGACC 
AAACAGGAGT AATGATTCCA AATTGCAATG TGGAGACACC ACAAGTAGGA 
TTTTTCAACC ATAATAGTAC TAGTAACAAT GGTATGGTGA TGGATTTGAA 
TAATTTTGGA GAGTACCAGA GGATGATGGA AGGTGAAGGA CTGACCAGAA 
CATATAGCGA CACAGATTCG ATGCATGGGG CGTTTAATAA CGCTGCAGAG 
ATGCAGATGG GAGAAAACAC CCAGCACATG GTAACTGGAT GCAATGATAG 
CCCACTAACG TTGCCTTCAA CAGAAGGCTC AAGCTTGGAA GATACCCCCT 
ACAAAGGTGT GCGTCTAACA GCTGAACAGA GAAAGGAAAA GATCTCCAGG 
TACATAAAGA AAAGGAACGA AAGGAACTTC AGCAAAAAAA TAAAGTACGC 
TTGTAGAAAA ACCTTGGCGG ATAGCAGGCC TCGGGTCCGC GGAAGGTTTG 
CCAAGAACGA CGAACTCTGT GAAGCTACCA GATCAAGCTC CCAAGATTTT 
GAACAATATG AACATGTTGT GGGAATGAAG GGAGAAGACA TGCTTGATTC 
TTCCAATATT TTGGCACATT TGAGTGGAAT GAACCCTTAC GGCTATAAGT 
ACAACAGCAC TGTGGAATCC TGGATATAAT TCTCATAAAC ACACAAATTA 
AAGTGTGTTT TCCTTTCAAT TGTGCAAGCA TTAAACACAG TTTTCCCTTG 
CTCCCAGTAA ATAAGACTGA TGCTTTAGAA GCTCTATTCG CAAGAGAAGT 
GCTTAGGTCA AGTTATTGTT TCTGCACACT ACTGATTTGT AAATAGAATT 
GTTTCCTTGT CATAATAGAG ATAACAAGTT TC

Gene models with high sequence identity

AT1G04500.1 [+] show detail - CCT motif family protein
E-value: 7e-32; Score: 135.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	CCT domain	4.3e-19
ProfileScan	CCT domain	15.507

See the detailed result >

AT1G04500.1

Model type: Protein coding
Short Description: CCT motif family protein
Computational Description: CCT motif family protein; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT2G33350.2); Has 1789 Blast hits to 1789 proteins in 111 species: Archae - 0; Bacteria - 6; Metazoa - 2; Fungi - 2; Plants - 1654; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).
Link: InterPro Scan - TAIR