K43134

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K43134

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • hyponastic (PATO:0002329)
    (Cauline leaf::Shape::hyponastic)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
T2  
cauline leaf (PO:0000013)
  • hyponastic (PATO:0002329)
    (Cauline leaf::Shape::hyponastic)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K43134

Determination of introduced cDNA(s)

  • J023143P16 - Rice Full-length cDNAs - Original: J023143P16

    full reading [+] show sequence

    Nucleotide sequence: J023143P16 - full reading 
    GAGCTTTCCC CTCTCTTTCG CTTCGCGAGA TTGGTTGATT CATCTCGCGA 
    TTGATCGAGC TCGAGCGGCG GTGAGGTGAG GTGGAGGAGG AGGAGGAGGA 
    GGAGATCGGG ATGGGGAGAG GGAGGGTGGA GCTGAAGAGG ATCGAGAACA 
    AGATCAACAG GCAGGTGACG TTCGCGAAGC GGAGGAATGG GCTGCTCAAG 
    AAGGCGTACG AGCTCTCCGT GCTCTGCGAC GCCGAGGTCG CCCTCATCAT 
    CTTCTCCAAC CGCGGCAAGC TCTACGAGTT CTGCAGCGGC CAAAGCATGA 
    CCAGAACTTT GGAAAGATAC CAAAAATTCA GTTATGGTGG GCCAGATACT 
    GCAATACAGA ACAAGGAAAA TGAGTTAGTG CAAAGCAGCC GCAATGAGTA 
    CCTCAAACTG AAGGCACGGG TGGAAAATTT ACAGAGGACC CAAAGGAATC 
    TTCTTGGTGA AGATCTTGGG ACACTTGGCA TAAAAGAGCT AGAGCAGCTT 
    GAGAAACAAC TTGATTCATC CTTGAGGCAC ATTAGATCCA CAAGGACACA 
    GCATATGCTT GATCAGCTCA CTGATCTCCA GAGGAGGGAA CAAATGTTGT 
    GTGAAGCAAA TAAGTGCCTC AGAAGAAAAC TGGAGGAGAG CAACCAGTTG 
    CATGGACAAG TGTGGGAGCA CGGCGCCACC CTACTCGGCT ACGAGCGGCA 
    GTCGCCTCAT GCCGTCCAGC AGGTGCCACC GCACGGTGGC AACGGATTCT 
    TCCATTCCCT GGAAGCTGCC GCCGAGCCCA CCTTGCAGAT CGGGTTTACT 
    CCAGAGCAGA TGAACAACTC ATGCGTGACT GCCTTCATGC CGACATGGCT 
    ACCCTGAACT CCTGAAGGGC CGATGCGACA ACCAATAAAA ACGGATGTGA 
    CGACACAGAT CAAGTCGCAC CATTAGATTG ATCTTCTCCT ACAAGAGTGA 
    GACTAGTAAT TCCGTGTTTG TGTGCTAGCG TGTTGAAACT TTTCTGATGT 
    GATGCACGCA CTTTTAATTA TTATTAAGCG TTCAAGGACT AGTATGTGGT 
    ATAAAAGGCC GTACGTGACA GCCTATGGTT ATATGCTGCA CAAAAACTAC 
    GTATGGTACA GTGCAGTGCC TGTACATTTC ATAATTTGCG GTAAAGTTTA 
    TTGACTATAT ATCCAGTGTG TCAAATATAA TAAAATGTCG AGGTTTAATT 
    ACC

    Gene models with high sequence identity

    1. AT1G24260.1 [+] show detail - K-box region and MADS-box transcription factor family protein
      E-value: 2e-67; Score: 253.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Transcription factor, MADS-box 0
    ProfileScan Transcription factor, MADS-box 33.137
    ProfileScan Transcription factor, K-box 15.301
    HMMPfam Transcription factor, MADS-box 2.9e-29
    HMMPfam Transcription factor, K-box 3.8e-28
    HMMPanther MADS BOX PROTEIN 1.4e-85
    HMMPanther MADS BOX PROTEIN 1.4e-85
    superfamily Transcription factor, MADS-box 2.8e-32
    Coil coiled-coil 0
    Coil coiled-coil 0
    FPrintScan Transcription factor, MADS-box 1e-32
    FPrintScan Transcription factor, MADS-box 1e-32
    FPrintScan Transcription factor, MADS-box 1e-32
    HMMSmart Transcription factor, MADS-box 1.4e-40

    See the detailed result >

    AT1G24260.1

    Model type
    Protein coding
    Short Description
    K-box region and MADS-box transcription factor family protein
    Curator Summary
    Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif.
    Computational Description
    SEPALLATA3 (SEP3); FUNCTIONS IN: protein binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT5G15800.1); Has 7422 Blast hits to 7421 proteins in 918 species: Archae - 0; Bacteria - 2; Metazoa - 630; Fungi - 302; Plants - 6411; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR