K42902

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K42902

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K42902

Determination of introduced cDNA(s)

  • J013139E12 - Rice Full-length cDNAs - Original: J013139E12

    full reading [+] show sequence

    Nucleotide sequence: J013139E12 - full reading 
    GATCCATGCC TTTGTGTTAG TGGTGATAGT AGAGATTTTT TTTTTAAAAT 
    AACAATCTTT CTTTGTTCAC AAATACTCGC ATCTTTCTTT CTTTCACATC 
    TTTTATAGAT TGGCACTACC ACTTTTCCTT TTTGTTCTAT ATGCAAATAT 
    ATTTATTTTT GTATGTAAAG TTGTTTAGGC CTTTTGTTCT TACCATCTAT 
    CCCTTTTCAG TTGGGAATAT GCTACATCTT ATAGTTGAAG CCTGTATTTC 
    AAGGAATTTG ATTGATACAT CTTCTTACTT ATGGCCCGGC TATGTTGTAT 
    CATCTGGGCA TTTGAAAGAT GCGACATTAC CCCAAGAATC CCCCTGGTTA 
    AACTTTATGC AAGGAGCACC ACTTTCAGGT CCACTTATTG ATGCTCTGAT 
    TGCTACTCCT GCTTCAAGCA CCACAGAATT GGATAGGTTA TATCACATAG 
    CATTAAATGG TTCAGAGGAG GAAAAATCAG CTGCTGCAAA AATTCTTTGT 
    GGTGCATCAT TTGTTTGTGG TTGGAATATC CAGGAATATG TGGTCCGCAT 
    GGTGGTCAAG CTATTATCAC CTCCATTGCC CTCAAATTCC TCAACACAGG 
    GCAGCATGAG CCACTACCTT GCTCAGATGT CTACATTAAA TGCACTCTTG 
    CTTGGTATTT CTTATGGTGA TGCTATCCAC ATTATTTCTT TGTATGGAAT 
    GGTTCCAGAT GTTGCTGCAG CTTTAATGCC AATCTGTGAA GTTTTTGGGT 
    CCATACCACC TCCATCTAAC CACAAGCCTG CCATTGTTGG TGAAATATCA 
    GTTTATTCGG TCTTCTCTTG TGCATTTCTT TGTCTTCTTC GACTGTGGAA 
    ATTTTATAAA CCCCCACAAG AATACTGTCT AGCTGGACGT GGAGGCTCAG 
    TTAGATTGGA GCTTACTCTG GACTACCTGC TGTTAATGCG CAATAACCAT 
    ATTGACTTTG CAAATTCATC TGCCAGTAGT AGAAACTCTA GCAACAACAT 
    AGGTCCATTA AATGAGGTTC CTGCTCAACC ACTTTATATT GATTCTTTCC 
    CCAAGTTAAG GGCTTGGTAT TTTCAGAATC AAGCTTGCAT AGCTTCAACC 
    CTTTCTGGTC TTTGCAACAA AAATCCTGTT CATCAAGTTG CAAACAAGAT 
    TTTGAGTATG ATTTGCAGAA AAATGAACAA ACCTGTTGTA TCATCTGGCA 
    ATCTTTCATC CACTTCTAGC AGTAGTGTCA GTGGTTCCTC TGTAAGTACA 
    CCAGATGATT ACCAAAGGCC AACAGTTCCT GCATGGGAAT TTTTAGAAGC 
    TGTTCCTTTT GTTCTTGAAG CTGTTCTTAC AGCATGTGCT CATGGACGGT 
    TTTCCAGCCG AGACTTGACT ACAAGTTTGA GAGATCTTGT GGACTTCTTG 
    CCAGCTTCTA TTGCAGCAAT TGTTAGCTAC TTCTTAGCAG AAATTACACG 
    AGGAATCTGG AAAATGGTCC CGATGAATGG AACTGAATGG CCTAGTCCTG 
    GTGCTTCTCT TCATTCCATC GAAGCAGAAA TAAAGGAAAT TCTCGCATCT 
    GCTGGCATTC AGATTCCCAG CTGCTATCCA CGTGGTGTAC CACCAATGCT 
    TCCTTTACCA ATGGCTGCGC TGGTCAGCTT AACAATTACA TTTAAGCTTG 
    ATAAGAGTTC AGAGTATATC CATGCGATCA GTGGCCAGGC ACTAGAGAAC 
    TGCGCAGGGG GCAGTTCCTG GCCAAGTATG CCCATCATAG CAGCCTTATG 
    GACACAGAAA GTCAGAAGAT GGCATGACTT TATCATCCTC TCTTGTCTGC 
    GTTCTCCATT CGGCAGAGAT AAAGATGCAG TTGCACAGCT CATCCAAAGT 
    TGCTTCTCAT CCTTTCTACG GTCCTCGTGC AGTGGGTCTG ACTTTACTGC 
    AAACCGTGGA GTTGGTGCCT TAATGGGAGA TGCAATCACC GGCCAAGGTC 
    TTCAGCTTCC CATGGCTCCT GGTTTCATTT ACCTGAGAAC TTGTCGAACA 
    TTCCATGACA CCTACTTTGT GAGTGAGGTA ATCCTGAAGC AAGTCATTGA 
    GTGGGCTGAC AAACTTGCAA ATGGATTCTC TTCCAGTGGC CCTCCACAGT 
    TAAAATCAGG ACGCACGCCA CTATCCAGCG CTGCATGTAT GGCGCATCAA 
    GTTGCGATGC TTGGTGGGGG ACTCCTGTGT GTTGCAGGTG GACCTCTTCT 
    GGTCCAGGTA TTGTATGAGG AGACCTTGCC TACGCTGCTG CTATCAGCTC 
    GAGAAGAGAG TATGAAAGAC CCTGGACCAG TTTCAAGCAC ACTCCAAGGT 
    TACGCCATGG CCAACATGCT CTTCTTCTGT GGTAGTCTGC TCTGGGGAGC 
    GGAAAGAACT TCTCCTGTCA TGAAATTGTC TTTCCTGTCA AGAAGGCCAC 
    GAGTGGTGGG AAACCATATG GATTTCATGG CGGGTGTATT GGATGGGCAC 
    ATTCTTCTGG GTTGTGACCA TGGCACCTGG AAGGCATATG TATCGCGCTT 
    TGTGTTCCTG GTGGTGAAGT TTGTCCCGTC ATGGTTGCGG GACATTAAAC 
    TGGACACGCT AAAGAAGATA GCGTCTGGGC TTCGGAGTTG GAATGAGCAC 
    GATCTTGCAT TGGCTTTACT TGAGCGAGGA GGACCTCAGG CAATCTCCAC 
    TGTAGTCGAC ACCTTGTTGT GATCTTTGCC TCTTGACATT TCCCACCCAT 
    TATCTGACAT AGGAGTTTTT GTAATCACAT TTGAGGCCAG GACTTGTGTA 
    GAGATGTCTT CTGGTTCAGG ATTTCTCAGT CGAGCTATCT AAAATTTCTG 
    AATTCTGTCA GCGGAGAGAT GCTAGCTAAT CTTGTTTGCT GGGTGCATTG 
    CTAACGTTGC TATTTTCAGG GTAGCATTGT GAACCCAAAA TCATACAGAG 
    GCCTTGCTCG ACAACGTATC CAGTTAGAAC TTCC

    Gene models with high sequence identity

    1. AT3G23590.1 [+] show detail - REF4-related 1
      E-value: 1e-167; Score: 587.00

     

    InterPro Scan Digest

    See the detailed result >

    AT3G23590.1

    Model type
    Protein coding
    Short Description
    REF4-related 1
    Computational Description
    REF4-related 1 (RFR1); BEST Arabidopsis thaliana protein match is: reduced epidermal fluorescence 4 (TAIR:AT2G48110.1); Has 143 Blast hits to 139 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR