K40717

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K40717

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • increased width (PATO:0000600)
    (Cauline leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: K40717

Determination of introduced cDNA(s)

  • J023029J10 - Rice Full-length cDNAs - Original: J023029J10

    full reading [+] show sequence

    Nucleotide sequence: J023029J10 - full reading 
    GTCTACTAGT GTACAGTGCC ACTGCGAGCT CTCCTCTCCG CCCCCGATCT 
    GGTCGCCTCG CTCGCCTCAA ACCCTAGAGC TCCATCCACC GACGAGCCCT 
    CTTGGGCGGA GGTGCTTCAT TGCTGCTGCT GCTGCCATGG ACCCCGCCCC 
    CACGCTCGCC GCCGAGCTCT GGCGAACGCC GTACCTCGGT GGCGGTGGTG 
    GTGGAGGAGG AGGAGGGCGT GGGTTGGAGG CGGCGGCGTC CGGGGTCACG 
    GAGCAGAGCA ATGGGAGCCG CGGGGGTGGC GGAGGAGGAG GCGCAGGGCG 
    GAGGAGGCAG CGGGAGGCCC CCGCGCTCGA GGACGACTCG TCCAGGATCG 
    TCTCCGCTTC CGGAGGAGGA GGCGGCGGTC AGGATTTGAC TGATTCAGAA 
    GCAAAGCGTT TCAAGGCAAG TAAATCAAGT GGAGATAATA GCAGTTTAAG 
    AACAGAGGCT GAAACTGATT CAAGAAATGC TAGCAAGTCT GGTGATCAAA 
    ATCCGCCACC ACCAGAACCA CCAAAGCAAG ACTACATCCA TGTGAGGGCA 
    AGAAGGGGTC AAGCTACTGA CAGCCATAGC CTTGCCGAAA GGGCACGTCG 
    TGAGAAAATA AGTGAGCGGA TGAAAATTCT CCAGGATCTT GTCCCTGGAT 
    GCAACAAGGT TATTGGGAAA GCATCAGTAC TTGATGAGAT AATTAATTAT 
    ATCCAGGCTT TGCAACGGCA AGTTGAGTTT TTGTCCATGA AGCTTGAGGC 
    TGTTAATGCT CATGTGAATA ATGGAATCGA AGCATTTCCA CCCAAAGATT 
    TTGGTGCTCA GGTATACAAC ACGGCTCCTG GATTGACGTT TGATCCACAA 
    ACACCAAGAG AATACGCCCA GGGATCAACA CCATCGGAAT GGCTCCACAT 
    GCAGATTGGT GGCACCTATG AAAGAGTGAC ATGAACAGAA CAAAGTCAGG 
    ATGGTGGCCC AAAATAAAGC ATACCATGAG TTCAGTCAGA AACCACGGCT 
    TTAGATTATT TTTCGAAACT CTCGTGCTCA AAATTCGATT TCATTCATAG 
    CATGGAGCTC ATGTATTTAG AGACTGCGAG CACAGTATTT TTACATCTGT 
    ACCGGGATAC AATTCTCATC AGATTCATGT ATTCCACGGA ATTTCGGCAG 
    GTCACGCTCA TTCGTAGCAT GAAAGAAAAG TAATAACCAT CAATAATTCT 
    CTTGCT

    Gene models with high sequence identity

    1. AT1G59640.1 [+] show detail - BIG PETAL P
      E-value: 3e-52; Score: 202.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Helix-loop-helix DNA-binding domain 12.664
    Coil coiled-coil 0
    HMMPfam Helix-loop-helix DNA-binding domain 1.1e-08
    superfamily Helix-loop-helix DNA-binding 2.7e-16
    Gene3D Helix-loop-helix DNA-binding 1.8e-09
    HMMSmart Helix-loop-helix DNA-binding domain 1.7e-11
    HMMPanther CENTROMERE-BINDING PROTEIN 1, CBP-1 6.6e-08
    HMMPanther STEROL REGULATORY ELEMENT-BINDING PROTEIN 6.6e-08

    See the detailed result >

    AT1G59640.1

    Model type
    Protein coding
    Short Description
    BIG PETAL P
    Curator Summary
    A basic helix-loop-helix encoding gene (BIGPETAL, BPE) involved in the control of petal size. BPE is expressed via two mRNAs derived from an alternative splicing event. The BPEub (AT1G59640.1)transcript is expressed ubiquitously, whereas the BPEp (AT1G59640.2) transcript is preferentially expressed in petals. Plants that lack the petal-expressed variant BPEp have larger petals as a result of increased cell size. BPEp is positively regulated downstream of APETALA3, PISTILLATA, APETALA1 and PISTILLATA3 and is negatively regulated downstream of AGAMOUS.
    Computational Description
    BIG PETAL UB (BPEub); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: petal morphogenesis, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G62610.1); Has 2426 Blast hits to 2417 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 160; Fungi - 48; Plants - 2216; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR