K38013

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38013

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)
stem (PO:0009047)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)
T2  
cauline leaf (PO:0000013)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K38013

Determination of introduced cDNA(s)

  • J013058A21 - Rice Full-length cDNAs - Original: J013058A21

    full reading [+] show sequence

    Nucleotide sequence: J013058A21 - full reading 
    GGGAGGCCCG TCTTCTCCCT AGTCTCTCTT CTTCCCCCTT ATCTCTAGGG 
    AGGAAAGAAA AATAACAAGA ACGCACCTTT TGTCTCTCTC CTCTCCTCCG 
    AGGTAAGGTT TGGGGAAGCT ACTTCTGACC ATGGCAGGCA CCCTGCTCCA 
    GCCGGTTGCC CTCGGAACAA CTTTTGCAGG CCGTGTAAGT GGTCAGCGAT 
    GGAAGTCTCA TGGCACAAGG AGGCCTCCCT CAATGTTGGC GATGTCCTTG 
    AGCCGCCCAG TTAAGATGGC CGCATTTGTC GGTCTGAGAT CGGTGCATAG 
    CTTCTCAGTC ACGCCTGTCA CCAACTTCAG ATCGACGGTT GCATCTTACA 
    GATCAAGACG GGGAAGGCGT GCTCGCTTGT AACCAGATCG ATGTTTGAGA 
    GGTTCACTGA GAAAGCTATT AAGGTTATAA TGCTTGCGCA AGAAGAGGCA 
    AGGCGGTTGG GCCACAACTT TGTCGGTACT GAGCAAATTC TCTTGGGTCT 
    GATTGGAGAA GGGACTGGTA TTGCTGCTAA GGTGCTCAAG TCAATGGGCA 
    TAAATCTCAA GGATGCACGT GTGGAAGTGG AGAAGATCAT TGGGAGGGGC 
    AATGGTTTCG TTGCTGTCGA AATACCATTC ACACCACGTG CAAAACGTGT 
    TTTGGAGCTT TCATTGGAAG AAGCTCGTCA GCTAGGACAC AACTATATTG 
    GATCTGAGCA CTTGCTTCTT GGACTGCTCC GTGAGGGTGA AGGTGTAGCA 
    GCCCGTGTGC TCGAAAGCCT TGGAGCCGAT CCTAGCAATA TTCGCACGCA 
    GGTTATCCGA ATGATTGGCG AGACTACAGA AGCTGTTGGT GCAGGAGTTG 
    GAGGAGGGAG TAGTGGCAAT AAAATGCCAA CACTTGAGGA GTACGGAACT 
    AATTTAACAA AATTAGCAGA GGAGGGAAAG CTAGATCCTG TTGTTGGAAG 
    GCAACCCCAG ATTGAGCGTG TCGTACAAAT TCTGGGCAGA CGAACAAAGA 
    ACAACCCATG CTTAATTGGA GAGCCTGGTG TTGGAAAGAC AGCAATTGCA 
    GAAGGCCTTG CTCAACGCAT TTCTACTGGT GATGTGCCTG AAACAATTGA 
    AGGAAAGAAG GTCATTACCC TTGATATGGG ACTTCTTGTT GCTGGTACAA 
    AATACCGTGG AGAATTTGAA GAAAGATTAA AGAAGCTGAT GGAAGAAATC 
    AAGCAGAGTG ATGAGATAAT ACTATTTATT GATGAAGTCC ACACTCTCAT 
    AGGAGCAGGA GCAGCTGAGG GTGCTATTGA CGCTGCTAAC ATTTTAAAGC 
    CAGCATTAGC AAGAGGAGAA CTACAGTGTA TTGGAGCCAC CACACTTGAT 
    GAATACAGGA AGCATATTGA GAAAGACCCA GCATTAGAAA GACGTTTCCA 
    GCCTGTAAGA GTGCCAGAGC CAACAGTTGA TGAAACCATA GAAATTCTCA 
    GAGGGCTTCG GGAACGATAT GAGATCCATC ATAAACTTCG TTACACTGAT 
    GATGCTCTGA TTTCAGCTGC CAAGCTATCT TATCAATACA TCAGTGATCG 
    TTTCCTCCCA GATAAAGCAA TTGATTTGAT TGATGAAGCA GGTTCACGTG 
    TAAGGCTTCG ACATGCCCAG GTTCCTGAAG AAGCTAGAGA GCTTGACAAG 
    GAGCTCAAGC AAATCACAAA AGATAAGAAT GAAGCTGTCC GTAGCCAGGA 
    CTTCGAAAAG GCTGGAGAGT TACGTGATCG TGAAATGGAA TTGAAGGCCC 
    AGATAACAGC TCTCATTGAC AAGAGCAAGG AGATGAGCAA AGCAGAGACT 
    GAATCAGGGG AGACAGGGCC ACTGGTCAAT GAAGCAGATA TCCAGCACAT 
    TGTATCCTCG TGGACTGGTA TTCCAGTAGA GAAGGTATCA AGTGACGAGT 
    CCGATAAGCT TCTTAAGATG GAAGAGACTT TGCATCAGCG TGTCATTGGT 
    CAAGATGAGG CTGTGAAAGC CATAAGTCGC TCCATCCGCC GTGCTCGTGT 
    GGGCCTCAAG AACCCGAACA GGCCGATTGC AAGCTTCATT TTCGCAGGTC 
    CAACCGGTGT TGGTAAATCC GAGCTCGCAA AAGCACTTGC AGCATATTAC 
    TTTGGATCTG AGGAGGCCAT GATCAGGCTT GATATGAGTG GATTCATGGA 
    GAGGCACACT GTATCCAAGT TGATTGGTTC ACCCCCAGGG TATGTTGGGT 
    ACACGGAGGG TGGACAGCTG ACTGAGGCAG TTCGACGCAG GCCATACACA 
    GTCGTGCTTT TCGACGAGAT CGAAAAGGCG CATCCAGATG TATTCAACAT 
    GATGCTCCAG ATCTTGGAAG ATGGAAGGCT GACTGACAGC AAGGGAAGAA 
    CAGTGGACTT CAAGAACACA CTTCTCATAA TGACTTCGAA CGTCGGAAGC 
    AGCGTCATCG AGAAGGGTGG TCGGAAGATA GGTTTCGATC TCGATTACGA 
    TGAGAAGGAC AGCAGCTACA GCAGGATCAA GAGCCTTGTC GTCGAGGAGA 
    TGAAGCAGTA CTTCCGCCCC GAGTTCCTCA ACCGTCTCGA CGAGATGATC 
    GTCTTCAGGC AACTCACCAA GCTGGAGGTC AAGGAGATCG CCGAGATCAT 
    GCTCAAGGAG GTCTTTGACA GGCTCAAGGC CAAGGACGTT GACCTCCAGG 
    TCACCGAGAA GTTCAAGGAG CGTATCGTTG ACGAAGGCTT CAACCCGAGC 
    TATGGTGCGA GGCCGCTAAG GAGGGCCATC ATGAGGCTCC TGGAGGACAG 
    CCTCGCGGAG AAGATGCTAG CTGGGGAGGT GAAGGAGGGT GATTCTGCCA 
    TTGTCGATGT GGATTCCGAG GGGAAGGTGA TTGTACTAAT GGCCAAAGTG 
    GGTTGCCTGA GCTTTCAACT CCGGCTGTCA CTGTGTAGTA GTTCATATAT 
    ACTGCAGAGT GTTAAGAGAT GCAGTGCTTT TCATTCAGAT ATATTTCTGC 
    ATAGTTAGCA ACTTAGCATA ACTGTATATA TAGTATATAC AAATCAAAGG 
    AGGAGGAAAC ACCAGCTGAT TCCTGGTTTC TCATGTTTGG GACACCTTTT 
    TTTTTATTAA CAATAATTTC ATATGGTAGA GGGATCTT

    Gene models with high sequence identity

    1. AT5G50920.1 [+] show detail - CLPC homologue 1
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 2.2e-83
    Gene3D no description 1.7e-87
    Gene3D no description 1.5e-24
    FPrintScan Chaperonin clpA/B 1.6e-41
    FPrintScan Chaperonin clpA/B 1.6e-41
    FPrintScan Chaperonin clpA/B 1.6e-41
    FPrintScan Chaperonin clpA/B 1.6e-41
    HMMSmart ATPase, AAA+ type, core 2.4e-13
    HMMSmart ATPase, AAA+ type, core 4.1e-10
    ProfileScan UvrB/UvrC protein 11.776
    superfamily P-loop containing nucleoside triphosphate hyd 1.1e-105
    superfamily P-loop containing nucleoside triphosphate hyd 9.5e-85
    superfamily Double Clp-N motif 1.7e-36
    HMMPanther ATP-DEPENDENT CLP PROTEASE 0
    HMMPanther ATP-DEPENDENT CLP PROTEASE 0
    PatternScan Chaperonin ClpA/B, conserved site 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPfam ATPase, AAA-2 1.2e-54
    HMMPfam Clp, N-terminal 8.5e-18
    HMMPfam Clp, N-terminal 2e-19
    HMMPfam ATPase, AAA-type, core 2.1e-15
    HMMPfam Clp ATPase, C-terminal 7.9e-25
    HMMPfam UvrB/UvrC protein 1.1e-09
    HMMPfam Protein of unknown function DUF3170 9.1e-19
    HMMPfam Protein of unknown function DUF3170 9.5e-12

    See the detailed result >

    AT5G50920.1

    Model type
    Protein coding
    Short Description
    CLPC homologue 1
    Curator Summary
    Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.
    Computational Description
    CLPC homologue 1 (CLPC1); FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity, ATP binding; INVOLVED IN: protein import into chloroplast stroma, regulation of chlorophyll biosynthetic process, protein targeting to chloroplast, chloroplast organization; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA+ type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), UvrB/UvrC protein (InterPro:IPR001943), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Clp ATPase (TAIR:AT3G48870.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR