K37944

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K37944

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K37944

Determination of introduced cDNA(s)

  • J033028M11 - Rice Full-length cDNAs - Original: J033028M11

    full reading [+] show sequence

    Nucleotide sequence: J033028M11 - full reading 
    GAAGGAGAGA GCCTTCCCGT CTCCTTTTTT TCCTTCCATC CAAAAAATTC 
    CAAATGGAGT AGTAGTTCAC ATTTTTACAC CGTCGTCTTC GCAAATTTAA 
    TACTACTATA CGAAGGAGGA GGAAGCTCTC GCGCCGCGGT CGCTTTCCTT 
    CCCCTAAATT AAATCCCGTG CGACGCGTAG AGACCTCCTC CTCCGCTTTC 
    TCCTCCAAAG CCCAAGCTAA TCCCCCTCCT CTTCCTCGTC GCCGGCGAGA 
    GCTCTTCGTC TTCTCCAACT CGACCGGAAG CAAGCGCGCT TCCGATCCGC 
    CATGGTGCTC TCCCACGGCG TGTCGGGCTC CGATGAGTCC GTCCACTCCA 
    CGTTCGCCTC CCGCTACGTC CGCACCTCCC TCCCCAGGTT CCGGATGCCG 
    GAGCAGTCGA TCCCCAAGGA GGCGGCGTAC CAGATCATCA ACGACGAGCT 
    GATGCTGGAC GGCAACCCGC GGCTGAACCT CGCGTCGTTC GTCACCACGT 
    GGATGGAGCC CGAGTGCGAC AAGCTCATCC AGGCCTCCGT CAACAAGAAC 
    TACGTCGACA TGGACGAGTA CCCCGTCACC ACCGAACTCC AGAACCGATG 
    TGTGAACATG ATTGCACACC TCTTCAATGC TCCTCTAGGG GACTCTGAAA 
    CGGCCGTCGG AGTCGGCACT GTCGGCTCGT CTGAGGCCAT CATGCTCGCC 
    GGTTTGGCCT TCAAGAGGAG GTGGCAGAAC AAGATGAAGG CAGCCGGCAA 
    GCCATGCGAC AAGCCTAACA TTGTCACCGG CGCCAATGTC CAAGTTTGCT 
    GGGAGAAGTT CGCGCGATAC TTCGAGGTTG AGCTCAAGGA AGTGGAGCTG 
    AGTGACGGCT ACTACGTCAT GGACCCAGCT AAGGCCGTGG ATATGGTCGA 
    CGAGAACACC ATCTGCGTCG CGGCGATCCT CGGGTCGACG CTGAACGGGG 
    AGTTCGAGGA CGTGAAGCTG CTCAACGATC TGCTCACCAA GAAGAACGCT 
    GAAACAGGCT GGGACACGCC GATCCACGTG GACGCGGCGA GCGGCGGGTT 
    CATCGCGCCG TTCCTGTACC CGGAGCTGGA GTGGGACTTC CGGCTGCCGC 
    TGGTGAAGAG CATCAACGTG AGCGGGCACA AGTACGGCCT CGTCTACGCC 
    GGGATCGGGT GGTGCATCTG GAGGAGCAAG GAGGATCTGC CTGAGGAGCT 
    CATCTTCCAC ATCAACTACC TCGGCGCCGA CCGGCCCACC TTCACCCTCA 
    ACTTCTCCAA GGGTTCCAGC CAGGTCATTG CACAGTATTA CCAACTAATC 
    CGCCTAGGCT TTGAGGGGTA CAAGAACATC ATGGAGAACT GCCAGGAGAA 
    CGCGATGGTG CTGAAGCAGG GGCTGGAGAA GACGGGGCGG TTCAACATCG 
    TGTCCAAGGA CAACGGCGTG CCGCTGGTGG CCTTCTCCCT CAAGGACAGC 
    GCCCGGCACA ACGAGTTCGA GATCTCCGAC TTCCTCCGCC GCTTCGGCTG 
    GATCGTGCCG GCCTACACCA TGCCCCCCGA CGCGCAGCAC GTCACCGTGC 
    TCCGCGTCGT CATCCGCGAG GACTTCAGCC GCACGCTCGC CGAGCGCCTC 
    GTGCTCGACG TCGAGAAGGT GCTGCACGAG CTCGACGCGC TCCCCGCCCG 
    CGTCGTCGCC AACGGCGGCG ACGCCGCCGC CGCGTCGGCG AGCGAGAGGG 
    AGATGGAGAA GCAGCGCGAG GTGATCTCCC TCTGGAAGAG GGCCGTGCTG 
    CCAAGAAGAA GACCAACGGC GTCTGCTAAA GCAAGTCAGC TGCGCAGCGG 
    GGATCGTATA CTATTATTAT GGTCCACTTC GTAATTGCGA CTTCTTAATT 
    TTTACCGTGT CGATCGGTTT ACCGTCTCAA GTCTGCTCTC ATCCGATTTT 
    CGGATTGATG CTGCTTAATT ATGTACCAAG TTAATTAATT CTTAGAGGAC 
    GGAATAGTTC CGACTCAATA CGAAGCATTG CCTGTATAAG TCGAACACGG 
    GATCATGCAT TTTACGTTGG GTGTGTAGCA GTGAATTGAT CAGTGATGCT 
    CCATCTCTAC TCTG

    Gene models with high sequence identity

    1. AT5G17330.1 [+] show detail - glutamate decarboxylase
      E-value: 0; Score: 829.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Glutamate decarboxylase 2.2e-233
    HMMPanther Pyridoxal phosphate-dependent decarboxylase 2.2e-233
    superfamily Pyridoxal phosphate-dependent transferase, major domain 7.6e-130
    HMMTigr Glutamate decarboxylase 0
    HMMPfam Pyridoxal phosphate-dependent decarboxylase 1.1e-103
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 9.5e-30

    See the detailed result >

    AT5G17330.1

    Model type
    Protein coding
    Short Description
    glutamate decarboxylase
    Curator Summary
    Encodes one of two isoforms of glutamate decarboxylase.
    Computational Description
    glutamate decarboxylase (GAD); FUNCTIONS IN: calmodulin binding, glutamate decarboxylase activity; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Glutamate decarboxylase (InterPro:IPR010107), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: glutamate decarboxylase 4 (TAIR:AT2G02010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR