K34138

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) abnormal (PATO:0000460) (Rosette leaf::Others)
	fruit (PO:0009001)	abnormal (PATO:0000460) (Silique::Others)
	seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997) (Seed::Number::few)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)
T2
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) abnormal (PATO:0000460) (Rosette leaf::Others)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K34138

Determination of introduced cDNA(s)

J013093I07 - Rice Full-length cDNAs - Original: J013093I07

full reading [+] show sequence

GACGGGCGAG ACCAGTAGTA AAGCTAAAGG CGCAAGGATT CCTCCGGGAA 
AAACCCTACC ACCCGAATCC ACGCCGCCGC CGCCGTCGCC GCCGCGCTCT 
CCTCCGGCGA GAGCTCAGGG GGATTCGATC GCGACCGGCG GAGGAGGTGA 
GGTGAGGTGA GGCTTGGCGG GCGGCAACCA TGGCGGACGA GAAGCACGCG 
GAGAAGCGGG AGGAGGTCTC CGAGCTTACT CCTTTTGACC CAACCAAGAA 
GAAGAAAAAG AAGAAGGTTG TTATCCAAGA TCCTTCTGAT GAGGTGGACA 
AGCTGGCAGA GAAGACAGAA AACCTGACAG TCACAGAGCC TGGTGAGCTC 
AACTTCACTG GGATGAAAAA GAAGAAGAAG AAACCTGTGG ATCTTGATTT 
GTCTATTAAT GACATTGGTG ATGGGGAGGA CATTTTAGAT GACCAAGTTG 
TAGAGGAGGA AGAAGGGGAA GGAATTGTGC TTGGAGGTGC CCCTAGGTAC 
CCGTGGGAGG GAACTGATAG GGACTACAAT TATGATGAGC TTCTGGGCAG 
AGTGTTCAAT ATTCTGCGTG AAAACAATCC AGATCTTGCT GGAGACAGAC 
GCAGAACTGT CATGAGGCCG CCACAGGTTC TTCGAGAGGG CACGAAGAAG 
ACAGTTTTTG TGAATTTTAT GGACTTGTGC AAAACGATGC ATAGGCAACC 
TGAGCATGTG ATGATGTTTT TGCTTGCTAA AATGGGGACA AGTGGATCAC 
TTGATGGGCA GCAAAGGTTG GTGATCAAAG GAAGATTTGC TCCGAAAAAC 
TTCGAAGCAA TCCTGCGGAG ATATATCAAT GAGTACGTCA TTTGCAATGG 
TTGCAAAAGC CCTGATACCA TTCTATCCAA GGAAAATCGT CTGTTCTTCC 
TTCGCTGCGA ACAGTGTGGA TCGTCGAGGT CTGTTGCTCC AATCAAGGCT 
GGATTTGTCG CACAAGTTGG TCGGCGGAAG GCCTGAACAT AAGTCGAAGC 
TTTGGATTTG TCTATTCAGT GAGCTGCTAT ATTGTGTGAG AAATGATTTT 
GCTCTATCTT GTACTCTTGT GTGGCCAGTT TTGGACCTAG TTTTGGTCAT 
GTAAATGCCG ATGGCATTTA GTCTATCATA GGGTGATTTT GACCGCGAAT 
GCAACAACAC GACCAAGCAA ACTAGGTTGT GTGTTGTGAA CTTGTGATTG 
AAATTGGGTA TCAGTTTCAG GGTCTGAGCA AATGGATCAT ATCTCCTGGG 
TAGATTAGCT CCGGAAGTGC

Gene models with high sequence identity

AT5G20920.3 [+] show detail - eukaryotic translation initiation factor 2 beta subunit
E-value: 5e-94; Score: 341.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Translation initiation factor IF2/IF5	6.3e-48
HMMSmart	Translation initiation factor IF2/IF5	3.7e-68
superfamily	Translation initiation factor IF2/IF5, N-terminal	7.5e-38
superfamily	Translation initiation factor IF2/IF5, zinc-binding	1.2e-11
HMMPanther	EUKARYOTIC TRANSLATION INITIATION FACTOR	8.8e-97

See the detailed result >

AT5G20920.3

Model type: Protein coding
Short Description: eukaryotic translation initiation factor 2 beta subunit
Curator Summary: protein synthesis initiation factor eIF2 beta
Computational Description: eukaryotic translation initiation factor 2 beta subunit (EIF2 BETA); FUNCTIONS IN: protein binding, translation initiation factor activity; INVOLVED IN: translational initiation, embryo development ending in seed dormancy; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF2/IF5, N-terminal (InterPro:IPR016189), Translation initiation factor IF2/IF5, zinc-binding (InterPro:IPR016190), Translation initiation factor IF2/IF5 (InterPro:IPR002735); BEST Arabidopsis thaliana protein match is: Translation initiation factor IF2/IF5 (TAIR:AT3G07920.1); Has 1323 Blast hits to 1320 proteins in 358 species: Archae - 271; Bacteria - 0; Metazoa - 350; Fungi - 277; Plants - 186; Viruses - 4; Other Eukaryotes - 235 (source: NCBI BLink).
Link: InterPro Scan - TAIR