K33009

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33009

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33009

Determination of introduced cDNA(s)

  • J013165K20 - Rice Full-length cDNAs - Original: J013165K20

    full reading [+] show sequence

    Nucleotide sequence: J013165K20 - full reading 
    GAATCGAAAC CGTCCGCATC TGACAGTGAA GGAAAGAGAA CAGAGGCCAT 
    GGCGTCTCTC CCGGTGCCAA GCGTGCAGGC CATGGTGGCG GCCATCGGCA 
    TCGACCATGT TCCACCCAGA TACCTCCGCC CCACGGACGC CGACGAGCCG 
    GTCGCTTCTG ACGGCGGCGA GGCGGAGATC CCCGTCGTCG ACTTCTGGAG 
    GCTGCAGCTC GGCGACGGCG ACGAGCTGGC TCGCCTCCAC ATTGCCTGCC 
    AGGACTGGGG CTTCTTCCAG CTGGTAAACC ACAATGTTCC AGAGGATGTG 
    GTGGAGGGGA TGAAGGCCAG CATCAAGGGA TTCTTCGAGC TGCCTGCGGA 
    GACCAAGAAG CAGGTCGTTC AGGAGCCAGG GCAGCTGGAA GGCTACGGTC 
    AGCTGTTCGT TGTGTCTGAA GATCAGAAGC TCGACTGGGC TGACATCCTC 
    TACGTGAAAA CGCAGCCGTT GCAGGACAGG AACCTCAGAT TCTGGCCTGA 
    CCAACCTGCC GGCTTCAGAA TGGCACTGGA CAGATACTGC GCGGCTGTGA 
    AGATCACAGC GGATGGCCTT CTGGCTGCCA TGGCGACCAA CCTGGGAGTG 
    GAGTCGGAGG TGATCGCAGA GAGATGGGTG GGTGGAGTCC AGTCGGTGAG 
    GGTGCAGTAC TACCCTCCGT GCGGTCAGGC GGACAAAGTA GTCGGCATCT 
    CTCCTCACTC TGATGCTGAT CTGGTGACCA TTCTCCTCCA AGCGAACGAG 
    GTGGATGGCC TGCAGATCAG GAGAGGCGGG GCTTGGCTTC CCGTCAGGCC 
    TCTGGAGGGC GCTCTCATCG TCAACGTGGG AGACATTCGT CAGGTCTTCA 
    CTAATGGGAG GTACGAGAGC GTCGAGCACC GGGTTGTTGT GGATGGGAAG 
    AAAGAGCGGC TGTCGATGGC GACCTTCCAT TCTCCAAGCA AAAACGCCAT 
    TGTAGGTCCT CTGAGCGAGA TGGTGGAGCA TGAAGACGAT GCTGCTTATA 
    CAAGCATGGA CCATGACGAA CTTCTGAAGC TCTTCTTCGC CAAGAAGCTG 
    GAGGGGAAGA ACTTCTTGAA CCCGATAAAG AAGCTGAAGA ACAGCGGCTG 
    ACCAAAGGAG TGGAAAGGAG ACTTGCTCTG CTTGCAACAT GTGTCTGTCC 
    AAAACAGGAC ATGTCCTTCA CTTTTTTAAA CACGTAGTTA TCAAATTGTT 
    TGAAAAATTA AATAAGATTT GTACAGTATA TATCTATTGT CCGAGTTGTT 
    TTAGTAGACA GTCAAATGAT TCTTTAAATA CTCAATGTAA TATTTGTGGT 
    AGAGGTTGAG ACTTTACTAA AATCAGTAGG ATGTTGATAT GTAACATGTG 
    TTTCACTTAT TGTTCGATGC AACATCTTCA AATAAGGAGT AAAATATAAT 
    TGTCT

    Gene models with high sequence identity

    1. AT1G17020.1 [+] show detail - senescence-related gene 1
      E-value: 4e-77; Score: 285.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 3.8e-94
    superfamily Clavaminate synthase-like 8.7e-94
    HMMPanther ETHYLENE-FORMING-ENZYME-LIKE DIOXYGENASE 4.1e-136
    HMMPanther IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL 4.1e-136
    HMMPfam Oxoglutarate/iron-dependent oxygenase 2.1e-24

    See the detailed result >

    AT1G17020.1

    Model type
    Protein coding
    Short Description
    senescence-related gene 1
    Curator Summary
    Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene.
    Computational Description
    senescence-related gene 1 (SRG1); CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G17010.1); Has 8560 Blast hits to 8517 proteins in 996 species: Archae - 0; Bacteria - 1133; Metazoa - 115; Fungi - 988; Plants - 4970; Viruses - 0; Other Eukaryotes - 1354 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR