K32108

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32108

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32108

Determination of introduced cDNA(s)

  • J023014B08 - Rice Full-length cDNAs - Original: J023014B08

    full reading [+] show sequence

    Nucleotide sequence: J023014B08 - full reading 
    GAGAGAGAGA AGGAGAGGGG CTTTGCACTT GCAGAGGAGA GAAGCAAGGT 
    GAGAAGTGAG GAGGCAAGGG AGGAGGTTTG CCGGAGAGGG GACATGCTCC 
    CTCCTCATCT CACAGAAAAT GGCACAGTAA TGATTCAGTT TGGTCATAAA 
    ATGCCTGACT ACGAGTCATC AGCTACCCAA TCAACTAGTG GATCTCCTCG 
    TGAAGTGTCT GGAATGAGCG AAGGAAGCCT CAATGAGCAG AATGATCAAT 
    CTGGTTTGGA CTAGACACAC CATATGCATT TTTTGTATCA GTAAATAATA 
    TTGCAATACA GCACCTCCAG GGTAAAAGGA ATATTGATGG ATGCAAAGTT 
    TGTTTGCATC TACACTACTG AAGTTATGTG ACATTTCTTT TCTTCTTGTA 
    CTAATGCTAG GTAATCTTGA TGGTTACACG AAGAGTGATG AAGGTAAGAT 
    GATGTCAGCT TTATCTCTGG GCAAATCAGA AACTGTGTAT GCACATTCGG 
    AACCTGACCG TAGCCAACCC TTTGGCATAT CATATCCATA TGCTGATTCG 
    TTCTATGGTG GTGCTGTAGC GACTTATGGC ACACATGCTA TTATGCATCC 
    CCAGATTGTG GGCGTGATGT CATCCTCCCG AGTCCCGCTA CCAATAGAAC 
    CAGCCACCGA AGAGCCTATT TATGTAAATG CAAAGCAATA CCATGCGATT 
    CTCCGAAGGA GACAGCTCCG TGCAAAGTTA GAGGCTGAAA ACAAGCTGGT 
    GAAAAACCGC AAGCCGTACC TCCATGAATC CCGGCATCAA CACGCGATGA 
    AGAGAGCTCG GGGAACAGGG GGGAGATTCC TCAACACAAA GCAGCAGCCT 
    GAAGCTTCAG ATGGTGGCAC CCCAAGGCTC GTCTCTGCAA ACGGCGTTGT 
    GTTCTCAAAG CACGAGCACA GCTTGTCGTC CAGTGATCTC CATCATCGTC 
    GTGCGAAAGA GGGCGCTTGA GATCCTCGCC GTTTCTGTCA TGGCAAATCA 
    TCCTTGGCTT ATGTGTGGTG CCCAGCAAAA AAAAATCTGA CTGAACCTGT 
    GTGTAAACTG ATGGGTATGG GTGGGTTTTG TGCAACTGTA ACTAGGGTGC 
    TTGACATCTG TGTCTGTTGT TCCTCTGCCT CCTTAGTTTG GAGACGGTGC 
    AGCTGCAGCT GGTACCAGTA ATCTGATCAT GCTAGACTTG TGACAAGGAC 
    AAAACTAGCA CCCCGTTATG TTTCCTGGCT TCTGAATTTG GTGGTCATTC 
    AGC

    Gene models with high sequence identity

    1. AT1G72830.1 [+] show detail - nuclear factor Y, subunit A3
      E-value: 8e-31; Score: 131.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan CCAAT-binding factor, conserved site 0
    HMMSmart CCAAT-binding transcription factor, subunit B 5.8e-39
    HMMPfam CCAAT-binding transcription factor, subunit B 2.8e-31
    FPrintScan CCAAT-binding transcription factor, subunit B 3.3e-25
    FPrintScan CCAAT-binding transcription factor, subunit B 3.3e-25
    HMMPanther TRANSCRIPTIONAL ACTIVATOR PHP2-RELATED 1.5e-71
    HMMPanther CCAAT-binding transcription factor, subunit B 1.5e-71
    ProfileScan CCAAT-binding transcription factor, subunit B 38.283

    See the detailed result >

    AT1G72830.1

    Model type
    Protein coding
    Short Description
    nuclear factor Y, subunit A3
    Curator Summary
    Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.
    Computational Description
    "nuclear factor Y, subunit A3" (NF-YA3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A8 (TAIR:AT1G17590.4); Has 684 Blast hits to 684 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 132; Plants - 381; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR