K31046

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31046

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
T2  
cauline leaf (PO:0000013)
  • hyponastic (PATO:0002329)
    (Cauline leaf::Shape::hyponastic)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
rosette leaf (PO:0000014)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31046

Determination of introduced cDNA(s)

  • J013052P13 - Rice Full-length cDNAs - Original: J013052P13

    full reading [+] show sequence

    Nucleotide sequence: J013052P13 - full reading 
    GTCGCGGCGA TCAAAAAAAC CCAACCCCTC CTCTCCTCGC CGCCGCCGCC 
    CATGGCCAGC GACCGCCGCT ACTACTACTT CGAAGAAGAC GATGGCGATG 
    GCGAGGAGGA GGTGGAGTGG CTGGCGATGG AGGCCGACGA GGACGACGTC 
    GGCCTGCTCG AGGAGGACGA CCTTCACCTG CGGCTTCCCG ACGACCGCCC 
    CGCGGATTGC TGGGCCATCA CACAAGAGTC ACTTCCTGCT GCCCAGCAAC 
    AAGACCTGTC TATGGTAATG AACTTGCTCA ACATAAAGCA GCACCTTGCA 
    CGCACACTCC TTATCCACCA CCGGTGGAAG ATGCATTGCA TTTATGATCA 
    CCTTGACAGA AAGGGGCGGG ACCGCATGCT CAGTGAGGCA TGCATTATTT 
    TGCCGAAGAA TAGCATGTCA GCAGCTAGCT CAACAAGTGT TACCTGCAAT 
    GTGTGTTTTG AGGACTTCTC AATGACTGAT GTCTCGACCA TGGACTGTGG 
    GCATTGCTTC TGCAATGACT GTTGGACAGA GCACTTCTTT GCATCCATTA 
    ATACTGGCAA CAAGCAGATT CGGTGCATGG AGGTTAAGTG CAAGGCCATT 
    TGTGATGAGG ACATTGTGCG CCGCCTCCTC AGTCTGAAGT ACCCTGCTGC 
    ATCTAAGCGC TTCGATCTCC TCCTACTTGA GTCTTACCTT GAGGACAATG 
    ACTCAGTGAA GTGGTGCCCC AGTGCCCCAC ACTGTGGCCG CGCAATCCAG 
    GTAGGCACCG GCGAGAGGTA CTGCGAGGTC GCTTGCCCCT GTGGTGTCAG 
    CTTCTGCTTC AACTGTGCAG GGCAGGTGCA CTCGCCTTGC CCATGTGCCA 
    TATGGGAGAA GTGGAAAGCT AAGGGCCATG GAGACTCGGA TAGCGTCAAG 
    TGGATTCTTG CCAACACCAA GAGCTGCCCC AAGTGCTCCA AGCCCATCGA 
    GAAGAACGGT GGCTGCAACC TTGTCCATTG CAAGTGCGGC CAGTGTCTAT 
    GCTGGCTCTG TGGTGGGCCT ACCGGGAGGG AGCACACTTG GGATAGCATC 
    TCCGGCCACA GCTGCAACCG CTACAAGGAG GAAAACGGCG ACAAGGTGGA 
    CACCAGCAGA CAGCAGATGC AGCGGTACAC GCACTACTGG GACCGTTACA 
    ACATCCACGC CGGCTCGTAC AAGGTGGAGC AGAAGGATCT TGGGCCTGCC 
    GTCGAGGAGC AGGTGAAGAA GCTGGAGTCG AACCTAACAG GTCCGAAGAT 
    GAACTGGGAC GGTAGCTGGC TCGCCATGGC GTACCAATCC CTGCTCGCAT 
    CGCGGCAGGT GCTGTCGCGG TCGTACGCCT TCGCCTACTA CATGTTTGGC 
    GGCGGCGAGG TGAAGACGCG CCCGTCGGAG CGGGCGAGCC TCGCCGTGGC 
    GCAGAACCTC TTCGAGGACC GGCAGGAGCA GCTGGAGCGC CACGTTGAGC 
    ATCTCTCCAA GGAGCTCGCC ACGGACTTGC TGGGGCTGCC GGAGGAGGAG 
    ATCGTCCTGA AGAAGGTGGA GATTGCCAAC CTCGCCAAGA TCGTCCAGGC 
    AATCTGCGGG CAGTTGTACA GGTGCATCCA GGACGAACTC CTGCCACTGC 
    TCGTCCAGCC CATGAACATT GCCGCGTACC AGCCGGACGG CCCTGACAAG 
    GCCAAGGAGT TCATCGGGGC TTGACATACA GACAAGGCTA GCTTCCAGTT 
    TGGCAGCTGC CGCTAACCTC ACTGTGCTTA TCAGGTAAGT TATATATATA 
    TATGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG 
    TCAGTATGTA GATTTGACTT ACTTACGCCT GAGCGAAGGA CGTAATGTTC 
    ATTCGAAATT AAAGTGCTAT ACTTGCCTTA TTTTTTGGTT GTTGGGGCGT 
    ATTTTGGTTT CAAAATAGTA TTCTAAGCAT TGACCATTCT TCTCATAAGA 
    TAGATAATTC TTTTTTTTTC CGTGAGGC

    Gene models with high sequence identity

    1. AT4G34370.1 [+] show detail - RING/U-box superfamily protein
      E-value: 5e-132; Score: 468.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Zinc finger, C6HC-type 1.1e-10
    HMMPfam Zinc finger, C6HC-type 8.7e-06
    HMMSmart Zinc finger, C6HC-type 8.2e-15
    HMMSmart Zinc finger, C6HC-type 0.24
    ProfileScan Zinc finger, RING-type 9.421
    HMMPanther RING ZINC FINGER PROTEIN-RELATED 1.4e-151
    HMMPanther ARIADNE RING ZINC FINGER 1.4e-151
    Coil coiled-coil 0
    superfamily RING/U-box 4.9e-13
    superfamily RING/U-box 2.3e-10

    See the detailed result >

    AT4G34370.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    ARIADNE 1 (ARI1); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G16090.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR