K30828

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30828

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30828

Determination of introduced cDNA(s)

  • J023137P20 - Rice Full-length cDNAs - Original: J023137P20

    full reading [+] show sequence

    Nucleotide sequence: J023137P20 - full reading 
    GACCTCGCAA ATCACAAGCA ACATCACCAC AGATCGATCG AGACAGCTAC 
    TGACATCAAC GTGAAAAAGG GAAGAAGAAC TAACCATGTC CATGCAGGAG 
    ATGCTCCGCA TTGGAGACGA CGACGGCCGG AGCGATGCTC TGGAACGCGA 
    GCTCAAGGAG AAGCTGAGGT TGCGCGGCGA TGCCTCACCG GCGAAATGCA 
    CCAGGCAGGA GCAGCGGTGG CGGTCTGATC ATGGCATCGT CGACGCCCGC 
    GAGAGGTTCG TGCAGGCGTA CGGCCGCCTC AGGGACGATC TCGTCGGCGA 
    CGACTCGTGC GAGCTCACCG ACGAAGCCAG GCGCTGGCTT GCTCAGATGA 
    TCGACTACAA TGTACCTGGA GGAAAGTTGA ACCGAGGGCT GTCAGTGATA 
    GACAGTTACC TGCTGTTGAA ACAAGGAAGT GAGGTTACTG AAGATGACTT 
    CTTCCTTGCT TGTGTGCTTG GTTGGTGTGT AGAATGGTTT CAAGCATGTG 
    CACTACTACT TGATGACATC ATGGACGATT CACATACCAG GAGAGATCAG 
    ATTTGCTGGT ACCGGCGACC TGAGGTTGGC CTCAGGGGTA TAAACGATGG 
    TATCATACTA AAATGTCACA TCTTGATAAT GATAAAAAAG TATTTCAGAG 
    AAAAGCCTTA CTTTCTTGAT ATCTTAGAAA TATGGAGCGA GATAGCTCTG 
    CAGACTTCTC TGGGGCAGAT GCTTGATCTT ATTAGCACAC ATACTGGAGC 
    AGATGATCTT GCAAAATACA GTATTGAAGG CTACCGTCGC ATTGTTAAGT 
    ACAAGACAGC GTACTACTCC TTTTACCTTC CTGTGGCCAA TGCTTTGCTC 
    TTATCTGGCG CAAAACTTGA AGACTTCAGT GGTCTAAAGG ATATACTTAT 
    TGAAATGGGC ATATATTTTC AGATACAGGA TGACTACTTG GACTGTTTTG 
    CTGACCCTAA CACCATAGGC AAGATTGGAA CTGACATCGA AGATCATAAG 
    TGTTCCTGGT TAATAGTACA GGCTCTTGGT CATGCTGACA ACAATCAAAT 
    AGAAGTACTA CATAGGAACT ATGGCAAGAA GGATTCAAGT TCTGTTTCCG 
    AAGTAAAGAG GACTTACGCG GCGCTTGATT TGAAAGATAT CTTCTCCGAG 
    TTCGAACGTC GATGCTACAA CCACCTGGTC ACCTCTATCG AAGCTCAGAA 
    GGATCATGCA GCACGGGAGA TCCTGATATC ATTTCTGAAG AAAATTCATC 
    AAAGGAAGAA GTAGTTAATA AGTTATAACA ATTATGACCT GTATGAGCTT 
    ATGGTAACAT TTAAAAATGA TCGAAATCTA TCTCCCCATA AGTTATAATA 
    ACACTATCTC CGGTTTC

    Gene models with high sequence identity

    1. AT5G47770.1 [+] show detail - farnesyl diphosphate synthase 1
      E-value: 2e-115; Score: 413.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Polyprenyl synthetase 3.9e-67
    HMMPanther FARNESYL-PYROPHOSPHATE SYNTHETASE 1.1e-136
    superfamily Terpenoid synthase 2.8e-93
    PatternScan Polyprenyl synthetase 0
    Gene3D Terpenoid synthase 5.5e-94

    See the detailed result >

    AT5G47770.1

    Model type
    Protein coding
    Short Description
    farnesyl diphosphate synthase 1
    Curator Summary
    Encodes a protein with farnesyl diphosphate synthase activity.
    Computational Description
    farnesyl diphosphate synthase 1 (FPS1); FUNCTIONS IN: dimethylallyltranstransferase activity, geranyltranstransferase activity; INVOLVED IN: farnesyl diphosphate biosynthetic process, isoprenoid biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: farnesyl diphosphate synthase 2 (TAIR:AT4G17190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR