K30343

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	abnormal (PATO:0000460) (Rosette leaf::Others)
T2
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	epinastic (PATO:0000945) (Rosette leaf::Shape::epinastic) abnormal (PATO:0000460) (Rosette leaf::Others)
	seed (PO:0009010)	low brightness (PATO:0000327) (Seed::Color::dark)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30343

Determination of introduced cDNA(s)

J023148H24 - Rice Full-length cDNAs - Original: J023148H24

full reading [+] show sequence

GAGACAATCC CCCCCTCCTC TCGCAGACAT CCGGGCCCCA CCACGTCAGC 
CTCTCATGGC CTTCGCGGCG GAGCCGATGG ATCTGGAGGT GTCGCCGGAT 
TCCTCGCCGG CGGCGGCGGC GGCGGCGGCG GTGTGCTCGA TCTGCCTGGA 
CGCGGTGGCG TGCGGCGACG GGGTGGCGGC GAGGTCCACC GCGCGGCTGC 
AGTGCGGCCA CGAGTTCCAC CTAGACTGCA TTGGATCTGC ATTTAATGCA 
AAAGGGGTGA TGCAGTGCCC AAATTGTCGG AATATTGAGA AAGGTCACTG 
GCTCTATGGG AATGAGAGCC AACCATGTAG CCATTCTGAT ACAGGTGACT 
GGCTGAATGG TGAAACCTTT GACTACCCGT TCTCATTTGA ATTTGGGTGG 
TGTCCCTTCA ATACACCATT GACCTCTGTT TTTGGGGAAA GCGAATCTGA 
GCCAAATCCT TTTTTGGAGT ATATAGGGTC TCTGCATGGT TTTCACCATC 
CAATGTATGC GCCTTCTAGT TCTACTGCCA GTACTGAAAG CATACCATTC 
CATCAGCGTC CTACTGGTAC GGAAGGTCAT GCAACTACAG ATTTGAGAAA 
TACTCAAGTT TTCAATGAAT CTGAGCCAAG AAACCATGAG AGAGAACAGC 
AGTATTTAGG TAGTGTTCAA ATGCCTGGAA CACTCAATCA TTCCACCGCC 
CCATTTGGCA TAGGAATGCC AAGATATGAT GGAGGCAACC AGCAAAGATT 
GCGACCACAT ATGCATGATA ATTCCTTATT CCACAGGCCG ACAGCTCGCA 
GAGCAAGCAA TCTTGCACAT TTGAGGTCAT TAACTGCTGC GTCTGAAACT 
AGAGGCCATG GCCATGGTAT GACAAGTCAC GCTGTTCAAC AAACAATTCC 
ATCATCCATG GCAAGCAATC CACAACCTCC TGCGACCAGA AGGGTTCGAC 
CAAGGGCTTT GTCAATCACA TCTTTCATTG CAGCCTCATC GTCAGCTGAG 
ATCAGAGCCC CCCATGACTT TCCTCTCACT GAAACCGCAA GCACCACAAA 
CGGTAACATC CGTAATGGTG TTGGTGCCCC TAGACATGCC AATCAATCAT 
ACAGCTGGAG TTCAGAGACC TTCTGGCCAC AAACTGGGGA ACCTCACTGG 
TGGAGTCCGA TGGCTCCCGT ACATAATCGA TCTTATGATA ATTTTAGTGG 
AAGATCAGCC ACAGAGCTGC TTTCCATTTA TGGCGCACAG AATGGTCTGC 
CTACTCCGCG ATTCCTGTGA ATACTTGTCT TCCCTCCATC GTGTATATTC 
CGGGGTTGGC CGATATTTGG GTTTGTTTCA GCAAAGAATG GGAAATAACT 
GAGGCTTCAG TGTCAGGAAC TCAGGTTGCT GTCATTAATC GTCATCTTAT 
GTTGATGATG CCGGTATTTC GTACCGTTAT GGTTTTTTAT TTCTGGAAGG 
CAACCTCATG TTAGTTTCTT CAAGTGAAGA TGCTTTATGA ATTGTCTCAG 
TTAAAGTGAC AATATTGTTT GGAATTCTCT ATATGTGCTA GTCCTGAATC 
ATACTGAGGA AAATGCTGCT AAACAATGTT GCCATTGAAC TGTAGTAATT 
ATCGAATCAA ATGCTTCTGC TGTATATCTT GAATC

Gene models with high sequence identity

AT2G47700.1 [+] show detail - RING/U-box superfamily protein
E-value: 3e-25; Score: 113.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Zinc finger, C3HC4 RING-type	1.3e-05
superfamily	RING/U-box	2.3e-12
ProfileScan	Zinc finger, RING-type	11.471
HMMSmart	Zinc finger, RING-type	5e-07
Gene3D	no description	0.0004

See the detailed result >

AT2G47700.1

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RED AND FAR-RED INSENSITIVE 2 (RFI2); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G05545.1); Has 457 Blast hits to 456 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 168; Fungi - 17; Plants - 198; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).
Link: InterPro Scan - TAIR