K29050

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	abnormal (PATO:0000460) (Rosette leaf::Others)
	whole plant flowering stage (PO:0007016)	premature (PATO:0000694) (Adult plant::Flowering::early)
	sporophyte vegetative stage (PO:0007134)	increased speed (PATO:0000303) (Adult plant::Growth::fast)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Hormones::Others::increase total Auxin

Original: K29050

Determination of introduced cDNA(s)

J013000G23 - Rice Full-length cDNAs - Original: J013000G23

full reading [+] show sequence

TTGGAGCCAG CAGCAACACG CACGCACGCA CCACACACGT AGCAGCAGAG 
CAATGGCGGC GGCCATGGCG CTGCAGGTGG TGGCCGGCGG CGGCTGCTGT 
TGCCAGCGGC CCGTTCTTGG AGCTGGTCGG CGGCGGTTGG CGGCGGCGCG 
TGCGGTGGCG TCGGACGCGG CGGCGGCGAA GGTGAGCGAG GAGGAGGGGA 
AGGTGAGGCT GGGTGGGTCG GAAGTGGCGG TGAGCAAGCT CGGCATCGGC 
GCCTGGTCGT GGGGGGACAC CACCTACTGG AACGACTCCG AGTGGGACGA 
CAGGAGACTG CAGGAGGCTA AAGCAGCATT TGACACAAGC ATAGATAATG 
GGATGACCTT ATTTGATACA GCAGAAGTTT ATGGTACAGC GCTGATGGGA 
GCAGTAAATT CTGAAAGTTT ACTCGGAGGT TTCATCAAAG AAAGGCAGGA 
GAAAGAACAG ATTGATGTTG CCGTCGCAAC AAAGTTTGCT GCACTTCCAT 
GGAGATTTGG CCGAGGAAGT GTTCTTTCCG CACTGAAAAA ATCGCTTGAC 
CGTCTTGGGT AATCTTCAGT TGAACTCTAC CAACTTCATT GGCCAGGGCT 
ATGGGGAAAT GAAGGGGATC TTGATGGACT GGCAGATGCC CTTTAGCAAG 
GCCTTGTAAA GGCTGTTGGG AGTCTCAAAC TACAATGAGA AACGCCTTCG 
GGATGCATAT GCGCGGTTGA AGAAAAAGAG GAGTTTCCAC TTGCTGCAAA 
CCAAGTGAAA CTACAGCCTA ATATACAGGA CTCTTGAGTT GAATGGTGTG 
AAGGCAGCTT GTGATGAGCT TGGCATCACC CTGATTGCTT ATTCCCCAAT 
AGCCCAAGGT GTTCTGTCAG GAAAATACAC TCCAGAAAAA CCTCCTACCG 
GTCCTCGAGC AAACACATAT ACCCCTGAGT TCCTCACCAA GCTTCAACCA 
CTCATGAACA GGATCAAGGA GATTGGAGAA AGCTATGGGA AGAACCCAAC 
CCAGGTTTCA CTGAACTGGC TGACATGCCA AGGCAATGTG GTGCCAATCC 
CCGGAGCCAA GAACGCCGGC CAGGCGCAGG AGTTCGCCGG CGCGCTCGGC 
TGGAGCCTCA CCGGCGACGA GGTCGAAGAG TTGCGGTCTC TGGCACGCGA 
GATCAAGGGC ATCAAGATGC CCATCGAGGA GTCATAGACA TGTAAAAACT 
GAAGAAGTTT TTCATGTATA TGATAGGAGA TGTGTATTGA TTGTACCATG 
CAATAGTAAA CATTTTACGG CGATAAAATG TGTAGAAGGT GTAGAAAATG 
AGTCAGAAAT TTCTGCCTGC ATGAATAGAA AAGGTTTATA TGACTTTGAG 
C

Gene models with high sequence identity

AT1G06690.1 [+] show detail - NAD(P)-linked oxidoreductase superfamily protein
E-value: 4e-66; Score: 249.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	Aldo/keto reductase	6.1e-16
Gene3D	Aldo/keto reductase	1.5e-22
HMMPfam	Aldo/keto reductase	1.5e-14
HMMPfam	Aldo/keto reductase	1.2e-23
superfamily	Aldo/keto reductase	3e-19
superfamily	Aldo/keto reductase	4.8e-27
HMMPanther	ALDO/KETO REDUCTASE	4.2e-31
HMMPanther	Aldo/keto reductase	4.2e-31
HMMPanther	ALDO/KETO REDUCTASE	1.6e-32
HMMPanther	Aldo/keto reductase	1.6e-32

See the detailed result >

AT1G06690.1

Model type: Protein coding
Short Description: NAD(P)-linked oxidoreductase superfamily protein
Computational Description: NAD(P)-linked oxidoreductase superfamily protein; FUNCTIONS IN: oxidoreductase activity, aldo-keto reductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase subgroup (InterPro:IPR020471), Aldo/keto reductase, conserved site (InterPro:IPR018170); BEST Arabidopsis thaliana protein match is: NAD(P)-linked oxidoreductase superfamily protein (TAIR:AT5G53580.1); Has 30017 Blast hits to 30001 proteins in 2563 species: Archae - 570; Bacteria - 19734; Metazoa - 1881; Fungi - 2197; Plants - 1331; Viruses - 0; Other Eukaryotes - 4304 (source: NCBI BLink).
Link: InterPro Scan - TAIR