K29034

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29034

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29034

Determination of introduced cDNA(s)

  • J013159M16 - Rice Full-length cDNAs - Original: J013159M16

    full reading [+] show sequence

    Nucleotide sequence: J013159M16 - full reading
    GAATCTTCGC CCTCCTCCTC CTCCTCGTAC GCGCCCACGC GGTTCTCTTT 
    CTGCCCCCTC GATCGATTTG AGCAGGGAAC GGAAGGGGGA GGTTTTTGGA
    GGAGGCCATG GTGCCGTCGG AGAGGGGGGA CGTCGCCACC GCCATCAGAC
    CCGCCGCTGC CGACAAGCTC GTCCATGGGC CTATCTCTGA CAAGAAGTGC
    CGGAAGAAGG TCCCGAGGAA GGTTCACAAA TCTGAGAGGG AGAAGCTTAA
    ACGCGGGCAT CTCAATGATC TGTTCGGCGA GCTGGGTAAT ATGCTAGAAG
    CGGATAGGCA GAGTAATGGG AAGGCATGCA TACTAACTGA CACCACCCGG
    ATCTTAAGAG ATCTGCTTTC TCAAGTAAAA TCTCTCCGGC AAGAAAACAG
    CACCCTCCAG AATGAATCTA ATTATGTTAC GATGGAAAGG AATGAGTTGC
    AGGATGAAAA TGGTGCGCTA CGCAGCGAAA TCTCTGACCT CCAAAACGAG
    CTGAGGATGC GTGCGACAGG GAGTCCAGGT TGGGGCCATG GCGCGACTGG
    ATCACCTCTC CCCGTTCCTC CCTCTCCAGG CACGGTTTTC CCATCGCAGC
    AGCCAATGCA GCCATCTCCC ATGACAACAA GCACAGTGTT CCCCTTGCAG
    CAGCCACTGC CACAACCAAC AGTCATTGAG CCCTCTGCAA GACAGCCACT
    GGAACTGAAG CTCTTCCTAG AAGCACCCCC CGCCGAAGAC CCTGAACCAT
    CAGAAGACCA GGAGGCTCCG AACAATGTGG CACGACCGCA GCCGAGGTAC
    CCAACAGAGG CATCTTCTTG GCCTATTAGC CTGGGACTTC CAAGAATGGA
    AGATGAGCAA ATGTAGTGGT AGCACGATAG ATGATAGCAC AGGTAGAGAT
    TGAGAGGGTC TGTTTTTAAT GCATGCAGGA ATTCCACACG AAAACACTTC
    TGTCCTTGCA TGAAAACTGG AAAATTTCCT GCATTCCAAG TAAGACCTGA
    GTAGATCAGC TCCAACCAAT CAGAAACTCA CTTTGAGCCT AGAGGATATA
    CTACTGAATG ATGTGCATGT AAATATTTCA ATCTCCCTTT TGTTTCTGTA
    AACTCTAGTG AGAATAGAAC CCGTTTTATC CCCTT

    Gene models with high sequence identity

    1. AT3G47640.3 [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
      E-value: 2e-23; Score: 107.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Helix-loop-helix DNA-binding 1.7e-10
    Coil coiled-coil 0
    Coil coiled-coil 0
    Gene3D Helix-loop-helix DNA-binding 8.1e-05

    See the detailed result >

    AT3G47640.3

    Model type
    Protein coding
    Short Description
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Curator Summary
    Encodes POPEYE (PYE), a bHLH transcription factor regulating response to iron deficiency in Arabidopsis roots.
    Computational Description
    POPEYE (PYE); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: cellular response to iron ion starvation, iron ion homeostasis, regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G36060.1).
    Link
    InterPro Scan - TAIR