K28651

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28651

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28651

Determination of introduced cDNA(s)

  • J013035J16 - Rice Full-length cDNAs - Original: J013035J16

    full reading [+] show sequence

    Nucleotide sequence: J013035J16 - full reading 
    GGGCACCAAC TCCCCACCAC TTCGCTTCGC TTCCCTTCCC TCCTCACCTC 
    TCCCGCGCGC GCGAGTTTAA CCGCTTAATT ATAACCGCCT CTCGGATTAG 
    CGCGGCTATA ATACCGCGCG CGATTGGCTG ATTAGCCCTA GGCAACGCTC 
    GCTAACACGC CACCACCTCG GCTTCGCTGT TTGCTGTTTG CTGCTGCTGC 
    TTCTAGGGTT AGGGTTTGGG GTGGGGAGGG GTGGATGCGC GTGGGCTGGT 
    GGTGGTGGTG GGGATGACGC CGCAGCGGTC TCCGGCGGCG GCGGCGGCGG 
    GGGGAGGGGG CACGCCGGCG CTGCACTACC TGAGCGGGCC GTACGGGGAC 
    ACGACGTACA CCAAGGTGTT CGTCGGGGGG CTCGCGTGGG AGACGCGGAG 
    CGAGGGGCTG AGGGCGCACT TCGAGGCGTA CGGGGAGATC CTCGAGGCCG 
    TCGTCATCAC CGACCGCGCC ACGGGGAGGT CCAAGGGCTA CGGATTCGTG 
    ACCTTCCGGG ACCCAGACTC GGCGAGAATG GCGTGCATGG ACCCGTACCC 
    GGTGATCGAC GGGCGCCGCG CAAACTGTAA CCTTGCCATC CTAGGCCGTC 
    CTGGGCCAGA CATACCTTTC GCACCTTTAA GGCCGGTCAT CCCATACAAT 
    GGAGGTGTGG CGGTTCCAGG GGGCATGTAT GTGCAAAGCC CAACATATCA 
    GCAACCCCCC TACAACTATC CACAGGCATT TGTATATCCT TCTTATGGAC 
    CATCAACTTA TGGGCCAGAA TACATGTATC CTCAGAATGC ATATGGTTCA 
    TATGTTGGGC AACAGTATGT TCCAGTATAT GGCGGTCCCA GGACAGTAGG 
    CCCAGCAGTT TACCCATATG GGCAGTTTGG CCAACCTGTG CCAGGTGATC 
    AACCGTATTC ACCTGGCTAT GTACCAGGTC GCATTCTGCC GCTATCTAAT 
    CAGAATGCTG CAAATGTTGT ACGCATGTCA ACAGTTCAGC AACAATATCC 
    TCCAGGAGCT CCACGCCCTC AGCAACAGCT CTTGATCCCT GCTCGTGCAC 
    AATTCACACC AAACAACATT TCGGAACAAA CGTCGGGCTG ACATAAGGAT 
    GCCAACAAGT ACAAATTTGA GGTATCCTAT AGTCTGCAGC AGGACTAAGA 
    ACAGCAGAAC TGCTAATTGG GCGGCATGCT TCTTTTCTTG CAAACTGTCA 
    TCTTTTGCAT TCTAAAGGTT CTCCTTATCC ATGGTTACCT GATCCATATA 
    AAATGTGAAT GTCAAGCTGC TCCGTTGGAA GGGGCAGGAA GGCGTGAGAG 
    TTTCGAAGCC ACTCTTGCGC TGCTTCTGTC AAGTGTCTGT GCATTCCCCA 
    TCTCCTGCCA GGAATTCTGA TAGCTGGTGG CCTGTACATG GACCAAAACT 
    GGATGCCGGA AATGGAGTCC GGAATCCAGC CCTGTGTATA ATAGCTCAAG 
    TAGGGTCCAA AATCGTAGAG CTAGTCAATT CTTTCAAACG TTGCTGATGC 
    GTCTGGTTAC AGTTGTGTAT AGCCCAATTC TCTCATCTTC GTCCTTCTCG 
    TCATCTCCAA TGCATGTGAT TGTGTTGCAT TATGTACAGC ATTAGGGCGT 
    TGGGTCGCGT CCTCGGCTGG TTGTGTAAAT TATTCATCCC AAAACTGTAA 
    AACTGTTTAT ATCACTTTAT ATGCAACGTG TAACTAAATA ATGGCAGTTC 
    CAATCCTAGA AAATAATCAA CTGCTCCTAC CTGTTAATGA TCC

    Gene models with high sequence identity

    1. AT1G76460.1 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 2e-66; Score: 250.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam RNA recognition motif, RNP-1 6.7e-17
    HMMSmart RNA recognition motif, RNP-1 3.6e-22
    FPrintScan PRICHEXTENSN 7.7e-09
    FPrintScan PRICHEXTENSN 7.7e-09
    FPrintScan PRICHEXTENSN 7.7e-09
    HMMPanther RNA-BINDING PROTEIN-RELATED 1.6e-68
    HMMPanther RNA-BINDING PROTEIN 1.6e-68
    ProfileScan RNA recognition motif, RNP-1 16.057
    Gene3D Nucleotide-binding, alpha-beta plait 1.9e-21
    superfamily RNA-binding domain, RBD 4.7e-23

    See the detailed result >

    AT1G76460.1

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Computational Description
    RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G20880.2); Has 4261 Blast hits to 4252 proteins in 371 species: Archae - 0; Bacteria - 0; Metazoa - 1989; Fungi - 541; Plants - 1112; Viruses - 30; Other Eukaryotes - 589 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR