K28448

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K28448

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • present in greater numbers in organism (PATO:0000470)
    (Cauline leaf::Number::many)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K28448

Determination of introduced cDNA(s)

  • J013033A11 - Rice Full-length cDNAs - Original: J013033A11

    full reading [+] show sequence

    Nucleotide sequence: J013033A11 - full reading 
    GACGGAGCTC GAGCAACAAC CACCCACGCA CATCAAGGAG TCATCTCACC 
    ACTCAACGAC AGCCTCGCAC AAGAGCAGGG AGGAATTTTC GGTTGTTCCT 
    CGTCCCAAGG ATCAATAGAT GGAGAAGGCA GCGTGCAACG AGCATGTGAT 
    CGGGATCCCA GTGAGCAACA GGGCTTTCGG CATCGAGGAG CCGGATTTCC 
    CAAGCGAAGG AGCAGCCGCC TACCACGCCG AGGCGAAAAG CTCTGCAACC 
    GCGCGTACGA GCTCCAGATT TGGCAGGACA GGGGACAGGC TCGCTCAAGG 
    CATCAAAGAA CATGTGACTC TAGGACCAAA ACTGTACGAG ACCATGAAAG 
    GCAAGCTGAC GCTGGGCGCG AGAATCCTCC AGGCAGGCGG CGTGGAGAAG 
    GTCTTCCGCC GGTGGTTCGC CGTCGGCAAG GGCGAGAAGC TCCTGAGGGC 
    CTCCCAGTGC TACCTGTCCA CCACGGCCGG CCCGATCGCC GGCATGCTCT 
    TCATATCGAC GGAGAGGATC GCGTTCCGGA GCGACCGGTC GCTGGCGCTG 
    ACCACCCCGA GCGGCGACAC GGTGCGTGTG CCGTACAAGG TGGCCATCCC 
    TCTGAGGAGG GTGAAGACGG CCAAGCCGAG CGAGAACAAG CACCGGCCGG 
    AGCAGAAGTA CGTCCAGGTG GTGACCGACG ACGGCTTCGA GTTCTGGTTC 
    ATGGGATTCG TCAGCTTCCA GGTGACCCTG AAGAACCTGG AGCTGGCCGT 
    CGCGCAGGCG CAGTGATCGA TCGATCTCTG ATGAAACAAA CGTCGAAGTT 
    GGGTCGTCGG TTTCTTGGTC GTGTGCCTTG TGTGTGGTCT GGTTAATCTG 
    TTGTGCATAT GTGGTAGCGT CGTAGGTGTT TGTGGTGGAT TGCTTGGCGT 
    TTTTGGCTTT GGAGCAAGTC CGGTACACAT GGTAGGAGAA ATTTTAGTGC 
    ATCAAATTTC TTGATTGGTG TTGGAGAAAA TAGTGCCACG GCAAAAGTGC 
    CATCATATAC ATGTGGTATG TACAAGATCA ATGAGAAATC CAAAAATGTT 
    TGTTCAACAC TACATACTAC AGC

    Gene models with high sequence identity

    1. AT5G08350.1 [+] show detail - GRAM domain-containing protein / ABA-responsive protein-related
      E-value: 1e-45; Score: 181.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart GRAM 2.3e-10
    HMMPfam GRAM 4e-12

    See the detailed result >

    AT5G08350.1

    Model type
    Protein coding
    Short Description
    GRAM domain-containing protein / ABA-responsive protein-related
    Computational Description
    GRAM domain-containing protein / ABA-responsive protein-related; CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182); BEST Arabidopsis thaliana protein match is: GRAM domain-containing protein / ABA-responsive protein-related (TAIR:AT5G23370.1); Has 358 Blast hits to 358 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 358; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR