K26604

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K26604

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K26604

Determination of introduced cDNA(s)

  • J013166L11 - Rice Full-length cDNAs - Original: J013166L11

    full reading [+] show sequence

    Nucleotide sequence: J013166L11 - full reading 
    GACAAAACCC CACTCTCCTT GCTCCGCCCC CGCCGCGTCG CCGTCGCTAT 
    TGCGCCGCCG CCGCCGCCGC CGCCGACGCC GTGCGTCGCG AAGTGCTACC 
    AGGAATGCTG GGATGAATTC ATATTGTGAT AAGAAAGAGG TTACTGTAGC 
    TTTTAGCAAA ACTAAAAGGC AAGAGGAGGA TGAAGTGATT TGGAGAATGG 
    TAGAACAAGG CGCTACAGAT GATGAAGAGT GTGGTGGTAC CAACTGTTCG 
    GCTGGCGAAA ATAGGGATCC TGGTTGGCCT GGAACGAGTG TCTTCAGGAT 
    GCTGATTCCT GCAACTAAAG TTGGCGCAGT AATTGGTCAC AGTGGAGAAA 
    GGCTTAGAAG ACTGTGTGAG GAAACAAAAG CCTGCGTCCG AGTAATAGGT 
    GGCCACTTTG CTGCTGCAGA GCGAGCTGTA ATCATTTTTG CAAAGGAACA 
    ACCTGATGAG CCAAAACCTC CAGCTATTGA TGCACTACTA AGAGTATATG 
    AGTGTATAAT CAATGATGAT GGTTTAGATG TGAGATATAA CAATATAGTT 
    GTGGCACGGA TTCTTACACC AAGTGAACAG GCAGCAAGCC TTATTGGCGA 
    TCAGGGTTCA GTGATTAATT ATATCAAGAA AGCTTCTAAA ACCAACATCC 
    ATGTTATTGA CGGTGACTTG CCACCTGTTG CACTTGAAGA TGATATGATT 
    ATTGAAATTT GGGGACTGCC TGCAAGAGTG CATCAAGCAT TGGAACTTGT 
    TGCTTGTCAT TTGAGAAAGT ACCTGGTTCA TCGAAGTGTC ATCCCACTGT 
    TTGACCCCCA TGTGTCTATT CCAATCTCAC CTGTGGATAT GCCCCCATTC 
    CACTACAGTG ACCATCATGA GGGCCTTCTG CACGAAGCTA GTCCAGGCTA 
    TTACTCCCTA TATGCTGAAG CTTTTCAACT TGAACACCCA TGGACTGATA 
    CTAGTTATTC AAGGTATCCA ATGGAAAACT TTACACATGC TGACATATTT 
    GAATACAGAC AAGAAGCACC AGTATTTTTT GGGAGATATC GGTCAGTCAC 
    ACCTCCACAT TATGGGCATG AAGCAGAAGC ATATTTATCA TCTCCAATGG 
    AATTATGTTT GCATAACAAC CTGAATACAT ATGGATGGCA AGCAACTCCA 
    CCAATTGGTC GATCAGATAC TGTTGAAAGA ATACGCTCCC TTATATCTGT 
    GTATGGAAAA CAGGCACATC CACATCGGCT GAGGCAGACA TATCAATCAA 
    CTAAAATGGA AAAACATCCA CACTCGGGGA TATCTTTGTA CAGAAGGGAT 
    GATCATCCAA CAAGGGTATC TCCATCACCT GCTACTGAAC TACCCCCATC 
    TCCTGCTGTT TCTGCATATA AATGGCAAGT ATCTCCATCC TTAAAGATGT 
    ATCCTTCAAC TAATGTCGAA AACCTTCAAC ACTGCCGTGT TTCTGCATGC 
    GCTCCAGAAG AACTGCCAAA TGTGGTTGTG CCTTCGTTAA CTAGTCAATC 
    TCCTGCAGTC ACTTCTCAGG TTATAATGAA GATGCAAGTT CCAATTTTCT 
    ATGCTGAAGC GGTAATTGGC CCAACTGGTG CACGAATTGA TTACATTCGC 
    CAAGCCAGCG GATCAAGCGT CGTGATAAAG GATCTTGATG ACAGTGCAAT 
    GTCTATTGAG ATCACTGGAA GTGCTGCAAC AGATGTTCAA ATTGCAGAGC 
    AGTTGATAAA GAACTTCATG GCTGAAGCTG CTGCCGCTTC CCCTGATCAC 
    AGTTATGACT TCATTCCATC ACATTTGCCA GCACCGAGAT CTCCAGAGCC 
    AGATATTCCA ACTACTTCAC TCACTCGCAG AGCAAGCTGT TTTACAGAAC 
    CTCGCCTGCA AGCGACCTAC TGAGTTCCCA AGAGTTCTCT TTCTGCACAT 
    AGTCCCTACA CCGGCAATAC AGGAAATCCG CGAGAGTACA TTCCCAGAAA 
    GTTTTGATAT CCATCCTCAG ATGATTAATA TGCGCCCCCT TTTTGAACCC 
    CCAAGACTTG TATCTAATAT TTTCTTTTTC TTTGGCTTTT AGCCATAGAC 
    TTTGATCCAT GAGTTAGAAA TTGACTCTGA TCCATGAGTT AGAAATAGAC 
    CTTGATCCAT GGGTTAGAAG TCTGAGATTA TGGTATAGGA CAACAATTTT 
    TTGGTGGATT CAGGGTAAGT GATGTACAAG ATATGTGCCC TCAGATGTTT 
    GAGAGACAGT TTGTATTACA TG

    Gene models with high sequence identity

    1. AT3G04610.1 [+] show detail - RNA-binding KH domain-containing protein
      E-value: 2e-47; Score: 187.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan K Homology, type 1 10.211
    ProfileScan K Homology, type 1 11.699
    ProfileScan K Homology, type 1 12.978
    superfamily Eukaryotic type KH-domain (KH-domain type I) 1.3e-11
    superfamily Eukaryotic type KH-domain (KH-domain type I) 3.6e-11
    superfamily Eukaryotic type KH-domain (KH-domain type I) 5.9e-09
    HMMSmart K Homology 1.4e-05
    HMMSmart K Homology 4.2e-07
    HMMSmart K Homology 3.2e-06
    HMMPfam K Homology, type 1, subgroup 2.2e-07
    HMMPfam K Homology, type 1, subgroup 3.9e-09
    HMMPfam K Homology, type 1, subgroup 4.4e-07
    Gene3D no description 3.8e-06
    Gene3D no description 7.3e-06
    HMMPanther RNA-BINDING PROTEIN-RELATED 8e-63
    HMMPanther RNA-BINDING PROTEIN RELATED 8e-63

    See the detailed result >

    AT3G04610.1

    Model type
    Protein coding
    Short Description
    RNA-binding KH domain-containing protein
    Computational Description
    flowering locus KH domain (FLK); FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: positive regulation of flower development; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT4G26000.1); Has 8156 Blast hits to 5360 proteins in 381 species: Archae - 0; Bacteria - 269; Metazoa - 3587; Fungi - 776; Plants - 1209; Viruses - 216; Other Eukaryotes - 2099 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR