K25625

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	desaturated green (PATO:0001272) (Cauline leaf::Color::pale)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) desaturated green (PATO:0001272) (Rosette leaf::Color::pale) abnormal (PATO:0000460) (Rosette leaf::Others)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin)
T2
	cauline leaf (PO:0000013)	increased size (PATO:0000586) (Cauline leaf::Shape::large) decreased width (PATO:0000599) (Cauline leaf::Shape::narrow) abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) abnormal (PATO:0000460) (Rosette leaf::Others)
	seed (PO:0009010)	low brightness (PATO:0000327) (Seed::Color::dark)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K25625

Determination of introduced cDNA(s)

J033037A09 - Rice Full-length cDNAs - Original: J033037A09

full reading [+] show sequence

GGCTTCTCCT CTCCCATCTC TCGCTTCGCT CCGCTTGCCT AGGGTTTCGC 
CTCCCGCCGG CAGCCGCGCC CCCGCCGCCC TCGCCTCAGA TCCCGCCGCC 
GGCGACCCCC CCACGATCCT CCTCCCCCGC CGCCCGCCGA TCCCGTCGAG 
CTCCGGTTCG GTGTTTGCTC CCCTACTCCG CCGCCGCGAC GCCTCGGGCT 
TGCAGAGTCT GGGCGGGCGC CGCGGGGGGA GTGCAGATCT AGGGTTTGGG 
GGCTCTGGCT GGTGCATGAG AAGGGCACTG GAGTACGGAC GGCATGGAGG 
TGGAGGCGGC GAGGAGGGAC GCGGCCACGC TGGACCCGGA GCTGCTGCAG 
CTGCCGGAGC TCTCGCCTGG CGCGCTCCGG GAGAACCCCG CCCTTGCTGA 
GGCGCTCTAC TCGCAGTGGC TCGCGCTCCC CGAGACATCC AAGCTGGTGA 
ACTCTTTGAT TGAAGATGCA AAAGCTGGTG CTACATTGAA TGTTACTGGG 
AGCTCTGCTA GCACAAATGC TGCTTCAAGT GGTTCTTTGC CATCAATGTT 
TCCGGCTGGT AGTGCTCCTC CCCTTTCTCC TAGAAGCACT TCTGGCTCCC 
CCCGTGTTAT GAGGCGAGGA TCTGGAGCTG GACCATCATC CTTGGGATCT 
CCACTAAAAG TAGTTAGTGA ACCAGTGAGG GAGGTTATAC CCCAGTTTTA 
CTTCAAATAT GGGCGCCCTG CTCCAAAAGA TTTGAAGGAG CAATGCTTAT 
CTAGAATAGA TCACCTCTTT TTTGCAGGGG AGGGACTCCA GATTCAAGAA 
TTTAGATCAG TCACAAAAGA TATATGCAAA CTTCCATCGT TCTTCTCCAG 
TGTTCTTTTC AAGAAGATCG ATGCTGCAGG CTCTGGAACT GTCACAAGGG 
ATGCGTTTGT TGATTACTGG ATCAATGATA ACAAGATTAC AATGGACACA 
GCTAGCCAAA TCTTTGAAAT ATTAAGAAAG CCGGATTACA ATTATCTCAC 
TCAGGAGGAC TTTAAGCCTG TCTTAAAAGA ACTTCTGGCA ACTCACCCTG 
GATTAGAGTT CTTGCAAGGC ACCCCTGAGT TTCAGGAGAG ATATGCTGAG 
ACTGTAATAT ACAGAATCTT TTATTCCATA AATAGAGCTG GAAATGGCCA 
TCTTACCCTC AGAGAGCTAA AACGTGGGAA TTTAATTGCT GCGATGCAGC 
AGCTGGATGA GGAAGAGGAT ATCAATAAAG TGTTGAGATA CTTCTCATAC 
GAGCACTTTT ATGTGATATA CTGCAAATTT TGGGAGTTGG ACACAGATCA 
TGATTTTTTG ATTGATAAAG AGAACCTTAT CAGATATGGA AATCATTCAT 
TAACCTACCG AATCGTTGAT AGAATCTTCT CACAGGTCCC AAGAAAATTC 
ACAAGCATGA CAGAAGGAAA GATGGGTTAT GAAGATTTTG TTTACTTTAT 
TTTGTCTGAG GAAGACAAAT CATCCGAGCC TAGCCTTGAA TACTGGTTTA 
AGTGTATTGA CCTTGATGGA AATGGCATTT TAACCACCAC TGAAATGCAA 
TTTTTCTATG AGGAGCAATT GCACCGGATG GAGTGCATGG CACAAGAACC 
TGTGCTTTTT GAGGACATAT TATGCCAGAT GATTGATATG ATTGGACCAG 
AGAACGAGTG CTACTTTACA CTACGGGACT TAAAACGGTG TAAACTCTCA 
GGGAATATAT TCAACATCCT ATTCAATCTC AACAAATTTA TGGCATTTGA 
AACTCGTGAT CCATTCCTCA TTCGCCAGGA ACGTGAAAAT CCAACTTTAA 
CCGAGTGGGA TCGGTTCGCA CATAGAGAGT ATATTAGATT GTCCATGGAA 
GAAGATGGTG AAGATGCTTC AAATGGAAGT GGTGATGTGT GGGATGAATC 
GCTTGAAGCT CCATTTTGAA ATATCTCTTG CTGGCTGAAT CTTGTGGGAC 
ATGGATGGAA TTGGTTTGGA GGTCAAAGAA ATGTAAAGTT GTTCGCTAGC 
CTGTGGAGAC CATTGCAGGC TTGAGGAAGT TTCAGTAACA CCAAAGACTT 
CTTACAGGAT TTACTGTGCA GGTCTGATTC GATAGTATCG GTTGTCCAGT 
TGTGCAAAAC ATTTTTGCTT GGCAGGAGAA ACGAGGAAGT TGATGTGGGC 
GTCCTGCCTT GTCAAGGCAA CAACCTCAAC AGTCTCAAGT GATGCTATAG 
TGGGGGACCT TTCATGGTCA ACATGTTTCT GTGTTCTTAT TGGTGCTTTA 
GGGGGGGATG TCGGTTTATT CAATTGCTGT GCTCAAATTT TGGAGCTGAA 
CTGTTATTGT TTGGCTGCCA TTTTCTTTGT TATTTTGTGG AAGTGCGAGC 
AAGCAATTCC ATCATTAACT TTGATCATGG TATGTAGCTT TCTGGTTCTG 
CTTTCTGTTC AGTATGGTGT TTTGTAGCTG TTGCCGTCAC TGGGTACATT 
TTGGGAGGTA AGGTAAAAAG ACCTCAGGAT ATGGATATCT GTTGTCATTA 
CCCATTTGTA ACATTAACAA GAAACGGTGG ATGGGTGCAT AAGAAATTTA 
AATGAGGATG TAGGTTCCAT CATC

Gene models with high sequence identity

AT1G54450.1 [+] show detail - Calcium-binding EF-hand family protein
E-value: 0; Score: 759.00

InterPro Scan Digest

Program	Description	E-value
ProfileScan	EF-HAND 2	6.201
ProfileScan	EF-HAND 2	5.475
ProfileScan	EF-HAND 2	9.66
superfamily	EF-hand	2.5e-23
superfamily	EF-hand	7.6e-16
Gene3D	EF-hand-like domain	5.9e-10
PatternScan	EF-Hand 1, calcium-binding site	0
HMMPanther	PHOSPHATASE 2A REGULATORY SUBUNIT-RELATED	1.9e-141

See the detailed result >

AT1G54450.1

Model type: Protein coding
Short Description: Calcium-binding EF-hand family protein
Computational Description: Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, 4 leaf senescence stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT5G28850.2); Has 645 Blast hits to 642 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 309; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).
Link: InterPro Scan - TAIR