K24916

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K24916

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
T2  
cauline leaf (PO:0000013)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
  • desaturated green (PATO:0001272)
    (Cauline leaf::Color::pale)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24916

Determination of introduced cDNA(s)

  • J013074A20 - Rice Full-length cDNAs - Original: J013074A20

    full reading [+] show sequence

    Nucleotide sequence: J013074A20 - full reading 
    GAATTCAGCT AGCTCATTCT GAACCCCATC TCTCGCTGGA ATGGGGATCA 
    GAATGGGAAG GCGACTCCTC TTCACCTTGT TCTTGGGAGC TCTGTTCTGC 
    AATGGCGTTT ACGCCAAGTT TACCCGGTAC AGCTTCCCCA AGGACTTCAT 
    CTTCGGCACA GGTTCAGCAG CTTATCAGTA TGAGGGCGCC TACAAAGAAG 
    GGGGCAAAGG TCCTAGCGTC TGGGACAACT TCACTCACAT TCCAGGTAAA 
    ATTTTAAACA ATGATAACGG CGATGTGGCA AATGACTTCT ATCACCGATA 
    CAAGGAGGAT GTGAGCCTCC TGAAGGACAT GAACATGGAT GCTTTCCGGT 
    TCTCCATTGC GTGGACCAGG ATCCTGCCAA ATGGATCCTT GAGTGGAGGA 
    ATAAACAAAG AAGGGGTTGC TTTCTACAAC AGCTTGATCA ATGATGTCAT 
    AGCAAAAGGG ATGATCCCAT TTGTCACTAT CTTCCACTGG GACACCCCCT 
    TGGCTCTGGA AAGCAAATAC GGAGGATTCC TCAGTGAAGA CATAGTGAAA 
    GAATACGTGG ACTTCGCGGA GGTGTGCTTT CGCGAGTTCG GCGACCGTGT 
    CAAGTACTGG ACCACATTTA ATGAGCCATT CACATATAGC GCCTACGGCT 
    ACGGCAAGGG CGTGTTTGCG CCGGGACGAT GCTCTTCATA TGTTTCCAAG 
    TCATGCGGCG TCGGTGACTC CAGTCGCGAG CCCTACCTCG TGGCACACCA 
    CATCCACCTC TCCCACGCTG CCGCTGTCCA GCTTTACCGC ACCAAGTACC 
    AGCCAACACA GAAGGGACAG ATCGGCATGG TGGTGGTCAC CCACTGGTTC 
    GTGCCGTACG ACAACTCCGA CGCTGACCGT GGCGCTGTGC AACGGAGCCT 
    AGACTTCATC TATGGGTGGT TCATGGACCC TATCGTGCAT GGTGACTACC 
    CAGGCACCAT GAGAGGTTGG CTCGGCAATC GGCTGCCAGA GTTCACGCCT 
    GAACAGTCGG CGATGGTGAA GGGCTCCTAC GACTTCATCG GAGTTAATTA 
    CTACACCACC TACTACGCTA AGAGTATACC GCCGCCTAAC TCCAACGAGC 
    TATCCTACGA CCTCGACAAC CGCGCCAACA CCACCGGCTT CCGTAATGGC 
    AAACCCATCG GTCCACAGGA ATTTACACCG ATCTTCTTCA ACTACCCTCC 
    AGGTCTCCGT GAGCTCCTCC TCTACACCAA GAGGAGATAC AACAACCCGA 
    CCATCTATGT TACAGAAAAC GGCATCGATG AGGGTAACAA CAGCACACTG 
    CCAGAGGCGC TCAAGGATGG ACACAGGATC GAGTTCCACT CAAAGCACCT 
    GCAGTTCGTC AACCACGCCA TCAAGAATGG GGTGAACGTG AAGGGCTACT 
    TCACGTGGAC ATTCATGGAC TGCTTTGAGT GGGGTGACGG CTACCTTGAC 
    AGGTTCGGCC TCATCTACGT CGACCGCAAG ACGCTCAAGC GCTACCGCAA 
    GGAGTCAGCT ACTGGATCGA AGACTTCCTC AAGAGGCACT GATCCAGCCC 
    CACAAAATTT CGGATTGATC ACGAGATCGA TCGGCTGGCC ACCAGATTTG 
    TGTTTCGTCA GTCTAGCTTT CAGCTGGTTA ATTTGTGATT TGTGCATCAG 
    TGGTGATGAC CGATATGATG GCGTGATGAA TTATGCTGCA TTACTATTGA 
    ATGTGTACCT CAGTACCTGT GCATCATTGC TGGCTGATCC CATTGAGCCG 
    GACAATAATA AGAAGAAACA ATAATGCTCC CTGTCGAGCA GTGTTGGGCT 
    GGTTCAGGCT T

    Gene models with high sequence identity

    1. AT2G44480.1 [+] show detail - beta glucosidase 17
      E-value: 7e-144; Score: 508.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Glycoside hydrolase, family 1, active site 0
    superfamily Glycoside hydrolase, catalytic core 2.1e-178
    HMMPfam Glycoside hydrolase, family 1 3.1e-159
    Gene3D Glycoside hydrolase, subgroup, catalytic core 1.2e-171
    FPrintScan Glycoside hydrolase, family 1 1.5e-21
    FPrintScan Glycoside hydrolase, family 1 1.5e-21
    FPrintScan Glycoside hydrolase, family 1 1.5e-21
    FPrintScan Glycoside hydrolase, family 1 1.5e-21
    FPrintScan Glycoside hydrolase, family 1 1.5e-21
    HMMPanther BETA-GLUCOSIDASE 1.2e-266
    HMMPanther Glycoside hydrolase, family 1 1.2e-266

    See the detailed result >

    AT2G44480.1

    Model type
    Protein coding
    Short Description
    beta glucosidase 17
    Computational Description
    beta glucosidase 17 (BGLU17); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: stem, hypocotyl, sepal, male gametophyte, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 15 (TAIR:AT2G44450.1); Has 11437 Blast hits to 11059 proteins in 1476 species: Archae - 140; Bacteria - 7925; Metazoa - 696; Fungi - 198; Plants - 1473; Viruses - 0; Other Eukaryotes - 1005 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR