K24716

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide)
	fruit (PO:0009001)	abnormal (PATO:0000460) (Silique::Others)
	seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997) (Seed::Number::few)
	flower (PO:0009046)	abnormal (PATO:0000460) (Flower::Others)
	stem (PO:0009047)	increased thickness (PATO:0000591) (Stem::Shape::thick) desaturated green (PATO:0001272) (Stem::Color::pale) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K24716

Determination of introduced cDNA(s)

J013132D22 - Rice Full-length cDNAs - Original: J013132D22

full reading [+] show sequence

GGCCTCCCTC CCCTCTCCTC CCTCCTCCTT CCAAATCTGC AGCTCAAGCT 
GGTGTTGGTG GTGTTGGTGG TGGTAGGCGG CGGCGTCGCC TTCTCCTCCT 
CTTCTTGCTG ACCCCGCCTG ACTGGCTTCC TTCCCCTTCC ACACCTGCCG 
GATCGGGTGG CTGGGTTGGT TGAGGGTCCA AGAAAGAAAG ATTTTGGGGG 
TTCGGGGGTG AACCCCCCTC CCCATGCCCC AAGTGAGGAA CCAGAATCTG 
GGCATGGTGG CTGACACGGA GAGCTCGGGG TCACTGGGTG GCAGCTCAAA 
TGCTGCTTCT GACAAGGCTG TTGATGGGTC TCTTGACAAA AGATCTCAGG 
AAAAGGCTCC AAAGAAAACT CATAAAGCTG AACGAGAGAA ACTTAAGCGT 
GACCAGTTGA ATGACCTTTT TGTTGAGCTC AGCAGTATGC TTGATCCTGA 
ACGACAAAAT AGTGGAAAGG CTACTGTGTT AGGTGATGCT GCACGAGTTC 
TGCGGGATCT TGTTTCTCAA GTAGAATCTC TCAGAAAGGA ACAGTCCGCT 
CTTCTAACTG AGCGTCAATA CGTTGGTTCA GAGAATAATG AGCTGCAAGA 
AGAGAATATC ATGCTCAGAG CCCAAATATT AGAACTGCAT AATGAGATTT 
GTGCAAGGAT GGGAAACAAC CGCCTCAATC AAAGCAATCT TGCGATGTCA 
CAACCAGTAG CCAACAATGG CAGTAACTCA GCAACTCAAC CCGTTCCACA 
TCACATATGG GGCAATGGTC CGAATTTAGC TATGGTGCAC CCAACAAACA 
CATTATCTCC GTTGCACAAT CAGCACCATC AGTCTGCTGG TGCCAGCCAG 
GTTTATGCGT CACGGCCTCA GGAGCTGCAG CTCTTTCCAG GGACCTCAGT 
ATCAACAGAG CGAGAACGAT CCCGAGCTGG AAGTGGAAGC ACCCCGGCTA 
CTTCTTCAGG CCTGACGGAT TCTTTGCCAG GGCAGCTTCG CCTCAGCCTC 
CCGCAATCTT CTCAAGAAGA AAACAGCAGC GGCAGCAAGA AAGGTCGAAA 
AAAGGGCTAG CCGGCCAGTT GACACTTGAC AGTTGCTAAA AAAGAATCGA 
TAAATCGATA CTTGGTGAAT GGTGATAGTT ACACACTCCT GTAAATACTG 
CGAAGCGCTT ACTGATACCT ACTGTGATAG TTGCCCTCTG TTGTAATTTG 
TATTTGTAGT GCTTGCTCTG AAACTTAGAT CACGTTTGAC TATAGTTTTC 
CACTTCCAGT CCTTTTACGG ATATATGTTG CCATATTACA GAGTTGTTTA 
CCAGGAAGAG AGAAAAATGA TGCAATTCGA TAGCAGTGTT AACTGATGAT 
AATTATATGA TCCCTGTCAC CAAGTCATGA AAATCTGATC TTGTATGTTC 
ATGGGCAGCT TGTTTCAGCA TTACAAGTTG AAGAAATATT TGTAATCTGT 
TGCAAACTGC ATGTTTATGG CTATGAGAAA TGATC

Gene models with high sequence identity

AT3G47640.3 [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
E-value: 4e-25; Score: 113.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	Helix-loop-helix DNA-binding domain	0.0025
superfamily	Helix-loop-helix DNA-binding	1.7e-10
ProfileScan	Helix-loop-helix DNA-binding domain	8.041
Gene3D	Helix-loop-helix DNA-binding	9.7e-05
Coil	coiled-coil	0
Coil	coiled-coil	0

See the detailed result >

AT3G47640.3

Model type: Protein coding
Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator Summary: Encodes POPEYE (PYE), a bHLH transcription factor regulating response to iron deficiency in Arabidopsis roots.
Computational Description: POPEYE (PYE); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: cellular response to iron ion starvation, iron ion homeostasis, regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G36060.1).
Link: InterPro Scan - TAIR