K23748

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K23748

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K23748

Determination of introduced cDNA(s)

  • J013078J21 - Rice Full-length cDNAs - Original: J013078J21

    full reading [+] show sequence

    Nucleotide sequence: J013078J21 - full reading
    ACACACAAGA AATCTCACCC AAAAAAAAAA AACCAACCAA TCAAAAACCA 
    AACCATGGCG CGCCACCGCC ACCGCCTCGC CGCCGCCGCG GCGCTCCTCC
    TCCTCCTCCT CTCCTCCGCC GCCGCGCTGT CGTCATCGGC GGCGGAGGGG
    GAGGAGGACC CGCTCATCGA GCAGGTGGTC GGCGGCGGGG AGGAGGAGGA
    CGCGCAGCTG GACGCGGAGG CGCACTTCGC GAGCTTCGAG CGGCGGTTCG
    GGCGGACGTA CCGGGACGCC GGCGAGCGCG CGTACCGGAT GTCCGTGTTC
    GCCGCCAACC TCCGCCGCGC GCGGCGGCAC CAGCGGCTGG ACCCCACCGC
    GACGCACGGC GTCACCAAGT TCTCCGACCT CACCCCGGGC GAGTTCCGCG
    ACCGCTTCCT CGGCCTCCGC CCCCCATCCT CCCCACCGAC GGCCTCCCCG
    ACGACTTCGA CTGGCGCGAG CACGGCGCCG TCGGCCCCGT CAAGGACCAG
    GGTTCGTGCG GATCGTGCTG GTCGTTCAGC ACGTCGGGGG CGCTGGAGGG
    GGCGCACTTC CTCGCCACGG GGAAGCTGGA GGTGCTCAGC GAGCAGCAGA
    TGGTCGACTG CGACCACGAG TGTGATGCAT CAGAATCGCG CGCATGCGAC
    TCAGGATGCA ACGGTGGCTT GATGACCACA GCCTTCAGCT ACCTCATGAA
    ATCCGGTGGC CTACAGAGCG AGAAAGATTA CCCGTACGCT GGACGAGAAA
    ACACCTGCAA GTTCGACAAG TCCAAAATCG TTGCCCAAGT AAAGAACTTC
    AGTGTGATCT CCGTCAACGA AGATCAAATT GCTGCCAACC TCGTCAAACA
    TGGCCCTCTT GCAATTGCAA TCAATGCGGC CTACATGCAG ACATACATCG
    GCGGCGTGTC GTGCCCCTTC ATCTGTGGGA GGCACCTTGA CCATGGTGTC
    CTCCTTGTTG GCTACGGATC GGCAGGATAC GCACCGATCC GCTTCAAGGA
    GAAGCCGTAC TGGATCATCA AGAACTCGCG GGGCGAGAAC TGGGGGGAGA
    AGGGGTACTA CAAGATCTGC AGGGGACCTC ATGACAAGAA CAAGTGCGGT
    GTTGATTCCA TGGTCTCCTC AGTGACTGCC ATCCATACCT CCAAAAAGGA
    GGAGTAGGAT AGGATTAGTC TCCTCTTTGT CTTTGCATAC CACACACTTT
    TTAATTTGCT CTTTTGTGGT TGAAACTGTT AGTGGTTAGG ACCATTCTGT
    GGTGTTGCTC GATTGCTATT TATGATCAGC AAAAACTGTG AAAACTTCCT
    TTACTTGATG TAATAGTACA TATTTGTTCG GACC

    Gene models with high sequence identity

    1. AT4G39090.1 [+] show detail - Papain family cysteine protease
      E-value: 1e-127; Score: 105.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Peptidase C1A, papain C-terminal 2.3e-10
    FPrintScan Peptidase C1A, papain C-terminal 2.3e-10
    FPrintScan Peptidase C1A, papain C-terminal 2.3e-10
    HMMSmart Proteinase inhibitor I29, cathepsin propeptide 1.5e-17
    HMMSmart Peptidase C1A, papain C-terminal 4.4e-103
    HMMPanther CYSTEINE PROTEASE 1.3e-168
    HMMPanther Peptidase C1A, papain 1.3e-168
    HMMPanther CYSTEINE PROTEASE 2.6e-31
    HMMPanther Peptidase C1A, papain 2.6e-31
    superfamily Cysteine proteinases 1.1e-12
    superfamily Cysteine proteinases 1.4e-88
    HMMPfam Proteinase inhibitor I29, cathepsin propeptide 4.9e-11
    HMMPfam Peptidase C1A, papain C-terminal 3.3e-70
    Gene3D no description 2.8e-10
    Gene3D no description 8e-76
    PatternScan Peptidase, cysteine peptidase active site 0
    PatternScan Peptidase, cysteine peptidase active site 0

    See the detailed result >

    AT4G39090.1

    Model type
    Protein coding
    Short Description
    Papain family cysteine protease
    Curator Summary
    Similar to cysteine proteinases, induced by desiccation but not abscisic acid. Required for RRS1-R mediated resistance against Ralstonia solanacearum. Interacts with the R. solanacearum type III effector PopP2. RD19 associates with PopP2 to form a nuclear complex that is required for activation of the RRS1-R
    Computational Description
    RESPONSIVE TO DEHYDRATION 19 (RD19); CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Papain family cysteine protease (TAIR:AT2G21430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR