K20824

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K20824

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K20824

Determination of introduced cDNA(s)

  • J023136O19 - Rice Full-length cDNAs - Original: J023136O19

    full reading [+] show sequence

    Nucleotide sequence: J023136O19 - full reading 
    GATCTGTTCT TAACATCCTG CAGACAAACA CAAGTGTTGC TAGCTCACTT 
    GGACCACACT TTTTCCCGCA AATTTCCCTA ATCTTTCTTG ACATGTTGAC 
    AGTTTACAGA ATGTACAGTG AGCTTGTATC AAGCACCATT GCTGAAGGGG 
    GACCTTTTGC CTCAAGGACC TCCTTTGTAA AACTCCTTAG ATCTGTCAAG 
    AGGGAAACAT TGAAATTGAT TGAGACTTTT GTGGACAAAG CTGAAGATCT 
    ACCACACATT GGGAAACAGT TTGTTCCTCC TATGATGGAT CCTATTCTTG 
    CTGACTATGC TAGAAATGAT CCCGATGCTA GGGAATCTGA AGTTCTGTCC 
    CTGTTTGCGA CGATCATAAA CAAATACAAA GGTGAAATGC TTGAAGACGT 
    GCCTCGCATA TTTGAGGCTG TTTTCCAGTG CACTCTTGAG ATGATCACTA 
    AAAACTTTGA AGATTACCCG GAGCATCGCC TCAAATTTTT CTCTTTGCTT 
    CGTGCGATTG GCACCCATTG CTTCCAAGCA TTAATTCAGC TTTCAAGTCA 
    GCAATTGAAA CTTGTGATTG ACTCTATCAA CTGGGCATTT AGACATACAG 
    AGAGAAACAT CGCAGAGACT GGTCTCAGTC TATTGCTGGA AATTTTAAAG 
    AACTTTCAGG CCTCAGGATT CCAAAATCAA TTCTACAAAA CTTATTTTTT 
    GAATATTGAA CAAGAGATCT TTGCAGTTCT GACAGACACA TTCCACAAGC 
    CTGGTTTCAA GCTTCATGTT TTGGTGCTGC AGCACTTATT TTGTGTGGTT 
    GATGGTCTGA CGGAGCCTCT CTGGGATGCA TCCTCAGTAC CATACCAATA 
    TACTGACAAC GCTATGTTTG TCCGAGATTA CACAATAAAA CTTTTAGGTT 
    CATCATTTCC CAACATGACA CCTACTGAGG TTACAAAATT TGTTGATGGG 
    CTTCTTAGTT CAAAACATGA CCTTCCAAGC TTCAAAAACC ATATTAGGGA 
    TTTCCTGGTG CAATCAAAGG AGTTCTCGGC TCAGGATAAT AAGGATTTGT 
    ATGCTGAAGA GGCTGCTGCA CAAAGAGAGA GGGAGCGTCA ACGAATGCTT 
    GCCATTCCAG GGCTTATTGC CCCAAGCGAA TTACAAGATG AGATGGTTGA 
    TTCATAATTC TGTGATTCAG CCTTGCTAAT CCAGTTCCAT TTCTTGCTTT 
    GGCCTCCAAA CCTCTGGAGC CCTCAACACC CCATTGCCCA AGTTCTCTTC 
    CAGGGTGGTG AAAGAAGGTG CCTGCTGTAA TTTTATTTTC GGTTACCTCC 
    ACTTGGTGCT GATTGCGAGA TTTCTGCTAG TCAATAGGAA AGGCCAACTC 
    AATTTTGTCG CAAGAGCTGT TTTGGACTGC CATTGGTTTG CAGTATGAGC 
    TGTCAGGTTA ATGTGATGAC AGCAGCTCTT GTGCTCCTGT ATTTTGCTAA 
    CATTGCTGCG TGTGCGGGGC CATCATATAG TATGATCACG GTACAACATT 
    GTATCATGAT TTTTAGTTTA GTTTATAGAT CGGCCGCATT CTGTATTGTG 
    GACAAGATTC AGGATAGAAA CTTATATTCG TAGTGTACTA TTTTGTG

    Gene models with high sequence identity

    1. AT5G17020.2 [+] show detail - exportin 1A
      E-value: 1e-169; Score: 593.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Armadillo-type fold 1.8e-15
    HMMPfam Exportin 1, C-terminal 5.8e-127
    HMMPanther EXPORTIN 1 (CHROMOSOME REGION MAINTENANCE PRO 1.4e-212
    HMMPanther EXPORTIN 1/5 1.4e-212
    Gene3D Armadillo-like helical 3e-118

    See the detailed result >

    AT5G17020.2

    Model type
    Protein coding
    Short Description
    exportin 1A
    Curator Summary
    Encodes a member of the exportin protein family (XPO1A) which functions as receptors for nuclear export. Binds to a variety of proteins having leucine rich export signals.Along with XPO1B involved with development of the male and female gametophytes.
    Computational Description
    exportin 1A (XPO1A); CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Exportin 1, C-terminal (InterPro:IPR014877), Armadillo-like helical (InterPro:IPR011989), Exportin-1/Importin-beta-like (InterPro:IPR013598), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: exportin 1B (TAIR:AT3G03110.1).
    Link
    InterPro Scan - TAIR