K19928

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K19928

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • increased size (PATO:0000586)
    (Cauline leaf::Shape::large)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
T2  
cauline leaf (PO:0000013)
  • increased size (PATO:0000586)
    (Cauline leaf::Shape::large)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Original: K19928

Determination of introduced cDNA(s)

  • J033091H19 - Rice Full-length cDNAs - Original: J033091H19

    full reading [+] show sequence

    Nucleotide sequence: J033091H19 - full reading 
    GGTCAGAACT CAAAATCTCA AATTCCAGAC TTCCAGAGGC GAGCACAGGA 
    GGAGGTTGGA AAAATCCATC CATGGGGGAT GAGAAGGCTG CTCCGAAGGC 
    GGGCGCCACC GCCGACCCGG TGGTGCTGAG GATGGAGTTG CATTGCGCCG 
    GCTGCGCGCA GAAGGTCAAG AAGTCCATCA AGCACTTGGC CGGGGTGGAG 
    TCGGTGGCGG CGGACGTGGC GACGAACACG GTCGTCGTGG CGGGGACGGC 
    CGAAGCGGCC GCGCTCAAGG CGAGGATCGA GGCGAAGACC AAGAAGCCCG 
    TCGAGGTTGT CTCCGCCGGC GGCGGTGGCG CCGCCGCCAA GAAACCCGCC 
    GCCGAGCCCA AGGCCGTCAA GGACGATGGC GGCGAGAAGA AGGACGCCTA 
    GGCGAAAGAG GAGAAGGGGA AGAAGCAACC GCCAGAGGAG AAGAAACCCA 
    AAGAGGAAAC GGTGCTGCTC AGGATTCGCC TCCACTGCGA TGGCTGCGCC 
    GACCGCATCA GGCGACGCAT CTACAAGATC AAAGGGGTGA AGGAAGTGGT 
    AATGGACGGC AATGCCAAGG ATGAGGTGAA GGTGTCGGGC ACAATGGACG 
    TGCCGGCCAT GCTGACCTAT CTCACCGAGA AGCTCAACCG CGCCGTGGAG 
    GCCGTGGCGC CCGGCAGCAA GAAAGACGAG AAGAAGAAGG ACAAGGGCGG 
    TGACGCCGAC GGCGGCGAGA AGAAGAAAGA CGCCGCCGGC GGCGACAAGA 
    AGGACAAAGG CAAGAGCATC GAGGTCGCCG GCCCGTCCAC CGCCGCCGCC 
    GCGGCGTCCA TGGCGCCGGC GCCGGCCGAG GCGAGCACGT ACCACGTCTC 
    GCCGTACGGC CACGGCTACT TCGCGTACCC GCAGCAGCAG GGACCTCCCC 
    CCAGCTACTA CCAGTACTAC GGCGGCGGCA ATGGCGACGG CGTGGGCTAC 
    GCCAACCCCA ATGCCGGCGG CGCCGGCGGC TACTACCACC CCCACCCCAA 
    CGACGTCCCT ACCTACCAGC CGCCGCCGTC GTACCCGCCG TACCCCTACC 
    AGCTCGACAT GTCGCCGGCG CCGCAGCTGT TCAGCGACGA GAACCCCAAC 
    GCCTGCTCGG TGATGTGATC GCCATGCCTC CGGCGACAGA GCTCAGAGGC 
    CAATCTGACG ACATGTACAT ACCGAGGACT TTAGACTTAG AAGATCAGAG 
    GCATCCACCA AACGTGTTGT TATGCTTTCG ATCAATTTTT GTCCAAACTT 
    ACCCCTTCTG TTGTAGCGTC ATTTTTTTTA GATCAATTCT TGACTGGTTA 
    AGCGAAATTT GATTTTAACT AGAGTATTAG CGGATGAAAT GGACTGATGG 
    AGTGATGATC TTTTGGTCGC AAAATGCGTG CCTAGTCAGA GATGTTGGTT 
    G

    Gene models with high sequence identity

    1. AT2G36950.1 [+] show detail - Heavy metal transport/detoxification superfamily protein
      E-value: 2e-12; Score: 71.20

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Heavy metal transport/detoxification protein 2.4e-12
    superfamily Heavy metal transport/detoxification protein 4.6e-09
    ProfileScan Heavy metal transport/detoxification protein 10.363
    Gene3D no description 3.3e-06
    Coil coiled-coil 0
    HMMPanther COPPER CHAPERONE-RELATED 7.1e-25
    HMMPanther COPPER TRANSPORT PROTEIN ATOX1-RELATED 7.1e-25
    HMMPanther COPPER CHAPERONE-RELATED 2.5e-53
    HMMPanther COPPER TRANSPORT PROTEIN ATOX1-RELATED 2.5e-53
    HMMPfam Heavy metal transport/detoxification protein 1.9e-14
    HMMPfam Heavy metal transport/detoxification protein 9e-10

    See the detailed result >

    AT2G36950.1

    Model type
    Protein coding
    Short Description
    Heavy metal transport/detoxification superfamily protein
    Computational Description
    Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: copper ion binding, metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT5G03380.1); Has 2801 Blast hits to 1963 proteins in 260 species: Archae - 0; Bacteria - 269; Metazoa - 336; Fungi - 47; Plants - 1796; Viruses - 4; Other Eukaryotes - 349 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR