K18921

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18921

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18921

Determination of introduced cDNA(s)

  • J023122G03 - Rice Full-length cDNAs - Original: J023122G03

    full reading [+] show sequence

    Nucleotide sequence: J023122G03 - full reading 
    GCTTGGTCAT ACTCCAAGTT GATGGCACCA AACATTGAAA ATTCACTGTC 
    ATGGCAGATG GAAGTCTGAG GGGTGGAGTC AACAAAGAAG GCATAAAGTA 
    CTACAATAAT TTGATCAATG AGCTATTATC GAAAGGGGTG CAACCGTTTA 
    TTACCCTTTT CCACTGGGAC TCACCTCAGG CGTTGGAAGA TAAATATAAT 
    GGATTTCTTA GCCCTAATAT CATAAATGAC TTTAAGGACT ATGCTGAAAT 
    CTGCTTCAAG GAGTTTGGTG ACAGAGTGAA AAATTGGATC ACCTTCAATG 
    AGCCTTGGAC TTTCTGCTCT AATGGCTATG CAACTGGCCT GTTTGCACCA 
    GGCCGTTGTT CGCCCTGGGA GAAGGGAAAT TGCAGTGTTG GAGATTCAGG 
    AAGGGAGCCT TACACTGCAT GCCATCATCA ACTACTTGCC CACGCGGAAA 
    CTGTTCGGTT GTACAAAGCG AAATATCAGG CCTTACAAAA AGGGAAGATT 
    GGAATAACTC TGGTCTCGCA CTGGTTTGTT CCCTTCTCCC GCTCCAAATC 
    CAACGATGAT GCTGCAAAGC GTGCTATAGA CTTCATGTTT GGATGGTTTA 
    TGGATCCCCT CATTAGAGGC GACTACCCCC TAAGCATGAG AGGATTGGTT 
    GGGAATCGCT TGCCACAGTT CACTAAAGAA CAGTCTAAGT TGGTCAAGGG 
    TGCATTTGAC TTTATTGGAC TTAACTACTA CACTGCGAAC TATGCTGATA 
    ACCTTCCTCC ATCAAATGGC CTTAACAACA GCTATACCAC CGATTCTCGA 
    GCTAATCTTA CCGGTGTACG AAATGGCATC CCCATAGGAC CGCAGGCTGC 
    TTCACCTTGG CTTTACGTCT ACCCTCAAGG CTTCCGTGAC TTGCTACTTT 
    ATGTTAAGGA GAACTATGGC AATCCTACCG TCTACATCAC TGAAAATGGC 
    GTTGATGAAT TCAACAATAA GACCTTACCA CTCCAAGAAG CCTTGAAGGA 
    TGACGCTAGG ATAGAATACT ACCACAAGCA CCTCCTTTCC CTGCTAAGTG 
    CTATAAGGGA TGGAGCAAAC GTGAAGGGAT ACTTTGCATG GTCGCTGCTT 
    GATAACTTCG AGTGGTCGAA CGGCTACACA GTTCGATTTG GGATAAACTT 
    CGTAGATTAC AATGACGGAA GGAAGAGATA CCCCAAGAAC TCTGCCCATT 
    GGTTCAAGAA GTTCCTCCTG AAATGATAAA AAAGCACCAT TGCACTCATT 
    GCTTTTCTCA TTGAATAATA AAAGAGTATA TGTTTTGCGT GAATTTGGTA 
    CAAGAGATGG AAGTAATCCA GTTAAATAAT AAATCCCTCT CTTACTGC

    Gene models with high sequence identity

    1. AT2G44480.2 [+] show detail - beta glucosidase 17
      E-value: 5e-130; Score: 461.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Glycoside hydrolase, catalytic core 1.6e-146
    HMMPfam Glycoside hydrolase, family 1 4.8e-127
    FPrintScan Glycoside hydrolase, family 1 7.1e-24
    FPrintScan Glycoside hydrolase, family 1 7.1e-24
    FPrintScan Glycoside hydrolase, family 1 7.1e-24
    FPrintScan Glycoside hydrolase, family 1 7.1e-24
    FPrintScan Glycoside hydrolase, family 1 7.1e-24
    Gene3D Glycoside hydrolase, subgroup, catalytic core 4.4e-142
    HMMPanther BETA-GLUCOSIDASE 4.7e-225
    HMMPanther Glycoside hydrolase, family 1 4.7e-225

    See the detailed result >

    AT2G44480.2

    Model type
    Protein coding
    Short Description
    beta glucosidase 17
    Computational Description
    beta glucosidase 17 (BGLU17); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: stem, hypocotyl, sepal, male gametophyte, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 15 (TAIR:AT2G44450.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR