K17350

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17350

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • hyponastic (PATO:0002329)
    (Cauline leaf::Shape::hyponastic)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
T2  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17350

Determination of introduced cDNA(s)

  • J023004P21 - Rice Full-length cDNAs - Original: J023004P21

    full reading [+] show sequence

    Nucleotide sequence: J023004P21 - full reading 
    CGAAGCAAGA GATAGGGATA AGGGGAAGAG GAGGAAGAAG GAGGAGGTGT 
    AGGGAGAAAC CGGAGCAACC TCGAAGCTAG TCCAAACTAG TGGGAGGTTG 
    TCTTTCCGGC AAGCCGGAGC CCGGAGCTAT CGATCATCAA GCTTTCTACC 
    CCGACCGACG AGGAAGAAGA CGACTGATCA ATTGATCAAA CCGATCTCTC 
    CATAGCTAGG TAGACAGGAG GAGAGGAGGA AGAAGAGGGG GAGAGGAGAC 
    TTATCTTGAT CGATGGCGCG AGGCAAGGTG CAGCTCCGTC GCATCGAGAA 
    CCCGGTTCAC CGTCAGGTCA CCTTCTGCAA GCGCCGTGCC GGCCTGCTGA 
    AGAAGGCCAG GGAGCTCTCC ATCCTCTGCG AGGCCGACAT CGGCATCATC 
    ATCTTCTCCG CCCACGGCAA GCTCTACGAC CTCGCCACCA CCGGAACCAT 
    GGAGGAGCTG ATCGAGAGGT ACAAGAGTGC TAGTGGCGAA CAGGCCAACG 
    CCTGCGGCGA CCAGAGAATG GACCCAAAAC AGGAGGCAAT GGTGCTCAAA 
    CAAGAAATCA ATCTACTGCA GAAGGGCCTG AGGTACATCT ATGGGAACAG 
    GGCAAATGAA CACATGACTG TTGAAGAGCT GAATGCCCTA GAGAGGTACT 
    TAGAGATATG GATGTACAAC ATTCGCTCCG CAAAGATGCA GATAATGATC 
    CAAGAGATCC AAGCACTAAA GAGCAAGGAA GGCATGTTGA AAGCTGCTAA 
    CGAAATTCTC CAAGAAAAGA TAGTAGAACA GAATGGTCTG ATCGACGTAG 
    GCATGATGGT AGCAGATCAA CAGAATGGGC ATTTTAGTAC AGTCCCACTG 
    TTAGAAGAGA TCACTAACCC ACTGACTATA CTGAGTGGCT ATTCTACTTG 
    TAGGGGCTCG GAGATGGGCT ATTCCTTCTA ACACTAATAA TGGCCTGGGG 
    GATACTTGTG TTCATTACTA GTGTGTAATA TGGTTAATAA TGCTTGTGTT 
    GCTGTTTGCT TTGCTATTCT GATGTACCTT ATTTAGACAA GTTCCCGCAG 
    GAAGTGTCTT TTAGTATTGT ATTTGTCTTG GGCTGTGGTG CTTTGTTTTT 
    CCCTAAAGAA CTCTTGAGGA GCTCTGTTGT TGAACCATTT CAAGTAATTG 
    AGACTATTGT TTCC

    Gene models with high sequence identity

    1. AT1G71692.1 [+] show detail - AGAMOUS-like 12
      E-value: 2e-52; Score: 203.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Transcription factor, MADS-box 1e-33
    FPrintScan Transcription factor, MADS-box 1.4e-25
    FPrintScan Transcription factor, MADS-box 1.4e-25
    FPrintScan Transcription factor, MADS-box 1.4e-25
    superfamily Transcription factor, MADS-box 3.2e-26
    PatternScan Transcription factor, MADS-box 0
    HMMPfam Transcription factor, MADS-box 2.3e-21
    HMMPfam Transcription factor, K-box 2.3e-13
    ProfileScan Transcription factor, MADS-box 28.917
    ProfileScan Transcription factor, K-box 11.201
    ProfileScan PROKAR_LIPOPROTEIN 5
    HMMPanther MADS BOX PROTEIN 6.1e-49
    HMMPanther MADS BOX PROTEIN 6.1e-49

    See the detailed result >

    AT1G71692.1

    Model type
    Protein coding
    Short Description
    AGAMOUS-like 12
    Curator Summary
    Encodes a member of the MADS box family of transcription factors. Involved in root cell differentiation and flowering time. Loss of function mutations have abnormal cellular differentiation in the roots and are late flowering. AGL12 along with AGL14, and AGL17 is preferentially expressed in root tissues and represent the only characterized MADS box genes expressed in roots.
    Computational Description
    AGAMOUS-like 12 (AGL12); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: vegetative to reproductive phase transition of meristem, root development; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT3G58780.1); Has 6551 Blast hits to 6549 proteins in 840 species: Archae - 0; Bacteria - 0; Metazoa - 621; Fungi - 300; Plants - 5564; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR