K16949

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	hyponastic (PATO:0002329) (Cauline leaf::Shape::hyponastic) abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) present in fewer numbers in organism (PATO:0001997) (Rosette leaf::Number::few) abnormal (PATO:0000460) (Rosette leaf::Others)
	stem internode (PO:0020142)	increased length (PATO:0000573) (Stem::Shape::long internode)
T2
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) present in fewer numbers in organism (PATO:0001997) (Rosette leaf::Number::few) abnormal (PATO:0000460) (Rosette leaf::Others)
	seed (PO:0009010)	decreased width (PATO:0000599) (Seed::Shape::narrow)
	stem internode (PO:0020142)	increased length (PATO:0000573) (Stem::Shape::long internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16949

Determination of introduced cDNA(s)

J033148H01 - Rice Full-length cDNAs - Original: J033148H01

full reading [+] show sequence

GACATTCTCC TCTCTCTCTC TCCCTCTCTC ATCCATTTCA ATTCTCTCTC 
TTGACACAGC TACAAGACAA GCCACCTCCT CCCTCCCTCC TCTACTGAAC 
CAAGAAGAGG AGAGAGAAAG TAGAGGAGAG GGAGACAAGC AGACAGACAG 
AATTGCCTGC CAAGAAACGA GATACACACA CATCTAGAGA GAGAAAGTAG 
AGAGAGATCA AGAACAAGAA CAAGATCAAG AAGAGGAGAT CTGTGGCGAT 
GGGGATGAGG CCGGGTTGGG TAGGCGGGCT GGTGGAGGAG AGCTTCTTCG 
TGGGTTGCCC AGCGCACGAG AGCCGGAAGA AGAACGAGAA GAACATCTTC 
TGCCTCGCCT GCTGCACCAG CATCTGCCCT CACTGCGCCC CCTCCCATCG 
CCACCACCCT CTCCTCCAGG TGCGGCGGTA CGTGTACAAT GACGTCGTCC 
GCCTCGGCGA CCTCGAGAAG CTCATCGAAT GCTCCTACGT CCAGCCGTAC 
ACGATCAACA GCGCGAAGGT GATATTCCTG AAGCCGAGGC CGCAGTCGAG 
GCCGTTCAAG GGGTCAGGCA ATGTGTGCCT CACCTGCGAC CGCATCCTGC 
AGGAGCCCTT CCACTTCTGC TCCCTCTCCT GCAAGGTGGA CCACGTCATG 
GTCCACGGTG GCGGCGACCT CTCCAACATC ATCCTCCTCC ACCCCCACCA 
CCACCCCAAC ACCGCCACCG CCTCGGCCTT CCCCCGTTTC GAGGACCTCC 
GTGTCGGCGC TGACGATGAT GCTGCCGCTA TCACCGCCGT CACGCCAGAA 
GGACGTTATG GTGGCGGCGG TGGTGGGTCT AGTGATAATG GCGGCGGTGA 
TGGCGGTGGC GGCGAGGTGG GGGAGGTGAA GAGGAAGAAG AAGAAGGGGG 
GAGGGTTCTT CCCCCAGATT CTGGGGCTGG GGAGTAGGAG GAAGGGTGCA 
CCCCACAGAT CACCCCTGTC CTAAGCCTAA TCACCACTTT GCCCCCCTAG 
CTACATATAT GTGCCATTAA TAGCAGCTAG CTGTTAATTA ATTACTAGTA 
GTAGCTAAGC TAGCCCCTAG CTGTACTAGC TAGTTCTAGC TTTTAGTGTG 
TCATGTCATT ATAGCCCTAT GATTAGCCAT GTAGAGAGAG ATGAGTGTGT 
GTGTTAATTT GTGTGTTGGT TGGTTGGTTG GATGGGTTCT TTGGGAGGTA 
GGGGCTTTTG TTTGTGTGAT CTAGCTTAGC TTAAGGTTAA TTAGCTTAGC 
TAGGGCCACT TCCAAGCTAA TAGGCACTTA GGCAGTGTTT TGATGGGAGA 
CAGAGAGGGA GGGAGAAAGA GAGGAAAAAA GCAAGCAATT CTCCTACTGT 
TACAGGCCTA GGTAGCTGAG TCACAGGTAT GTGGGGCCCA GGTTGCATGG 
CTTCCCCTAC ATGATAGTGT GTGGCTACCA ATTTTGTACT TGATGTAACA 
GCAGGGTTAC TTGCATACAC TTCCATAACC ACATATATAA TTAATTAATA 
TCGTTCCTC

Gene models with high sequence identity

AT1G31040.1 [+] show detail - PLATZ transcription factor family protein
E-value: 5e-57; Score: 219.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Protein of unknown function DUF597	8.6e-38
ProfileScan	Zinc finger, B-box	9.143

See the detailed result >

AT1G31040.1

Model type: Protein coding
Short Description: PLATZ transcription factor family protein
Computational Description: PLATZ transcription factor family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734); BEST Arabidopsis thaliana protein match is: PLATZ transcription factor family protein (TAIR:AT2G12646.1); Has 411 Blast hits to 411 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 411; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR