K16037

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16037

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16037

Determination of introduced cDNA(s)

J023099J20 - Rice Full-length cDNAs - Original: J023099J20

full reading [+] show sequence

GGCTCGATCA ATTCATCTCA TCGTCCATGG CGCCCAAGGT GGCGGTCACG 
GAGGCGACGG GGCGGCAGGC GGCGTCGTTC GTGCTCGGCT GCGTGGCCAC 
GCTCACCGTC ATGCTGCTCT TCCAGTACCA GGCGCCGCCG GACTACGGCC 
GCGCCGCCAG GTCGCCGGTG CAGTTCTCCA CCTCCAGAGA CCAGCTGCTG 
CTGCACTGCG GCGGCAATGG AACGGCGCCG CCGCCGCCGG TGATCGCACG 
TGGCGGCGAG GAGGCTAACA TCACCGGCAA GCCTCCGACG ACTGCTACTG 
CTGTCGCCGA GGAGCAGCCG CCAACCAAGC CTCCTGCGAC CTTTACTGCA 
TCTTCACCAA CTCATCATAT TCCAGCAACC AGTACAGATC TTGAAGAAGA 
GGGCGGCGAG TTCCGGGGGT TGGCGGCGGC GGTGGCGCGG GCGGCGACGG 
ATGACCGGAC GGTGATCATC ACGTGCGTGA ACCACGCGTT CGCGGCGCCC 
GACTCGCTCC TGGACATCTT CCTCCAGGGC TTCCGCGTCG GCGACGGCAC 
GCCGGAGCTC CTCCGCCACG TCCTCGTCGT CGCCATGGAT CCCACCGCGC 
TCACCCGGTG CCGCGCCGTC CACCCCCACT GCTACCTCTA CACCATGCCC 
GGCCTCGACG TCGACTTCAC CTCCGAGAAG TTCTTCGCCT CCAAGGACTA 
CCTCGAGCTC GTCTGGAGCA AGCTCAAGCT CCAGCGCCGA ATTCTCCAGC 
TCGGCTACAA CTTCCTCTTC ACGGACGTTG ACATTGTGTG GCTGAGGAAT 
CCGTTCAAGC ACGTGGCGGT GTACGCGGAC ATGGCGATCT CGAGCGACGT 
GTTCTTCGGT GACCCGGACA ACATCGACAA CTTCCCAAAC ACGGGCTTCT 
TCTACGTGAA GCCGAGCGCG AGGACGATCG CCATGACCAA GGAGTGGCAC 
GAGGCGAGGA GCTCGCACCC GGGGCTCAAC GAGCAGCCGG TGTTCAACCA 
CATCAAGAAG AAGCTGGTGA AGAAGCTGAA GCTCAAGGTT CAGTACCTGG 
ACACGGCCTA CATCGGCGGA TTCTGCAGCT ACGGCAAGGA TCTGAGCAAG 
ATCTGCACCA TGCACGCCAA CTGCTGCATC GGCCTCCAAT CCAAGATCAG 
TGATCTCAAG GGTGTTCTTG CTGACTGGAA GAACTACACC AGGTTGCCAC 
CCTGGGCAAA GCCCAATGCC AGGTGGACTG TGCCTGGTAA ATGCATCCAT 
TGATTTTGAT TGTCGATCGG GCAGTATCTG GTGTTGTAGG CTACGTACAG 
TCAGGAAGAT AGCTTTATTT GCACATGAAA GGGCGAATTT TGTTTTTTTT 
GGTTTGTTGT AGATTGATGG GTCGATTTCA AGTTATATTA CTGTATACCT 
GACGGCAGAC AAGTATACGC ATGATGGGCA AACTATATGA TATGATATGA 
TATGATAGTA CTTTAGATGT

Gene models with high sequence identity

AT4G19970.1 [+] show detail - CONTAINS InterPro DOMAIN/s: Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069...
E-value: 1e-67; Score: 254.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Nucleotid_trans	1.6e-64
HMMPanther	REGULATORY PROTEIN	2.1e-97
HMMPanther	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	2.1e-97
Coil	coiled-coil	0
Coil	coiled-coil	0

See the detailed result >

AT4G19970.1

Model type: Protein coding
Computational Description: CONTAINS InterPro DOMAIN/s: Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT5G44820.1); Has 801 Blast hits to 466 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 750; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Link: InterPro Scan - TAIR