K15613

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15613

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15613

Determination of introduced cDNA(s)

  • J023119I24 - Rice Full-length cDNAs - Original: J023119I24

    full reading [+] show sequence

    Nucleotide sequence: J023119I24 - full reading 
    GATCTCCCAA TTCCCCAACC CTAACGCCGC TCTCGCCTCC ACCCCCCAAA 
    TCCCGAATCC GCCGCCTCTT CGTTCGTCGT CGAGCTCGCT CGCTCGCCCA 
    ACCCTAGCGC GCCAGATCTA CCCGCCCCCG AGCAGCCGCC ATGGCGGAGA 
    CCCTCGACAT GACGCTCGAC GACATCATCA AGAACAACAA GAAGGCCAAC 
    CCCTCGTCCG GCCGCGGCCG CCGCGGATCT GCCGCTGGCG GCGGCGGCGG 
    CGGGGGTGGG GGTGTTGGTG GTGGCGGCGG CGGCGGCGTG GGGCCGACGA 
    GGCGGCCCTT CAAGAGGTCG GGGAACAGGG CGGGGCCCTA CCAGCCGCCC 
    AAGGCCCCTG AATCGGCGTG GCAGCACGAC ATGTACTCGG ATGTCGCGGC 
    AGGCGGCGGC GGCGGCAGCG GCGGAGGCGG GAGGGTCTCG GCTATCGAGA 
    CTGGCACCAA GCTCTACATC TCCAATTTGG ACTTCGGCGT CTCGACCGAG 
    GATATCAAGG AGnCTTTTCT CTGAATTAGG TGATCTTAAG AAATACGTAT 
    TTCACTATGA CAGAAGTGGG AGGTCTAAGG GACAGCTGAA GTTGTATTTG 
    CAAGGCGTGG CGATGCTGTC GCAGCAGTGA AGAAATATAA CAATGTGCAA 
    CTTGATGGTA AGCCAATGAA AATAGAGATT CTTGGGACCA ATACTCCTAC 
    AGCTGCAGCT GCTCTTCCAG CAAATAACGG AGGCTACGTT AGAAATGTTG 
    CTAAGAGTGC ACCAAGGGGT GGCCCAGCTG GACTACCGCA GGGTAGACCT 
    CGTCCAAGGG GGGGTGGGAG GCGCCGTGGT GGCGGAGGAG GCAGTGGTGG 
    TCCTGGTGGA TCCGGTGGTC GCCGTGGCAA AGAGCGTAGC CAGCCAAAGT 
    CTGCCGAAGA ACTTGATGCT GACTTGGAGA AATACCATGC AGATGCGATG 
    CAGACCAACT AGATCTTCAC GGTGTTGATA TTTCAACATG AAATCTGAAG 
    GATGTTTATC TGCTTGTTCC TGCTATTTGT GCTACCATGT TCAGTGGCAA 
    CAACAAAACC TTTGTTTGTC GGGTCTTGGT TTACTGAATT GTACGGTTTT 
    ATGTGTCTAC ATAGAACTAG AGTTAAGTGG ATGCTGGTGA ACACTGTTAT 
    GAATATTACT TGGTTGCCAC TTATGTTCCT TTTTCTGCGG AGTGAAGGCC 
    TGCTCGAGTT GCTCCACATA CAGAAGTTAC TGAAGATGTA TGAGGTGCTC 
    GTATCTTCTG ACTCCTTTAA CATACATCAT CTTCAACGGC

    Gene models with high sequence identity

    1. AT5G59950.5 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 2e-29; Score: 127.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily RNA-binding domain, RBD 1e-06
    HMMPanther RNA AND EXPORT FACTOR BINDING PROTEIN 1.4e-21
    HMMPanther RNA AND EXPORT FACTOR BINDING PROTEIN 1.4e-21
    HMMPanther RNA AND EXPORT FACTOR BINDING PROTEIN 0.0001
    HMMPanther RNA AND EXPORT FACTOR BINDING PROTEIN 0.0001
    HMMPanther RNA AND EXPORT FACTOR BINDING PROTEIN 1.5e-07
    HMMPanther RNA AND EXPORT FACTOR BINDING PROTEIN 1.5e-07

    See the detailed result >

    AT5G59950.5

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Computational Description
    RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G02530.2).
    Link
    InterPro Scan - TAIR