K15613

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15613

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15613

Determination of introduced cDNA(s)

  • J023119I24 - Rice Full-length cDNAs - Original: J023119I24

    full reading [+] show sequence

    Nucleotide sequence: J023119I24 - full reading
    GATCTCCCAA TTCCCCAACC CTAACGCCGC TCTCGCCTCC ACCCCCCAAA 
    TCCCGAATCC GCCGCCTCTT CGTTCGTCGT CGAGCTCGCT CGCTCGCCCA
    ACCCTAGCGC GCCAGATCTA CCCGCCCCCG AGCAGCCGCC ATGGCGGAGA
    CCCTCGACAT GACGCTCGAC GACATCATCA AGAACAACAA GAAGGCCAAC
    CCCTCGTCCG GCCGCGGCCG CCGCGGATCT GCCGCTGGCG GCGGCGGCGG
    CGGGGGTGGG GGTGTTGGTG GTGGCGGCGG CGGCGGCGTG GGGCCGACGA
    GGCGGCCCTT CAAGAGGTCG GGGAACAGGG CGGGGCCCTA CCAGCCGCCC
    AAGGCCCCTG AATCGGCGTG GCAGCACGAC ATGTACTCGG ATGTCGCGGC
    AGGCGGCGGC GGCGGCAGCG GCGGAGGCGG GAGGGTCTCG GCTATCGAGA
    CTGGCACCAA GCTCTACATC TCCAATTTGG ACTTCGGCGT CTCGACCGAG
    GATATCAAGG AGnCTTTTCT CTGAATTAGG TGATCTTAAG AAATACGTAT
    TTCACTATGA CAGAAGTGGG AGGTCTAAGG GACAGCTGAA GTTGTATTTG
    CAAGGCGTGG CGATGCTGTC GCAGCAGTGA AGAAATATAA CAATGTGCAA
    CTTGATGGTA AGCCAATGAA AATAGAGATT CTTGGGACCA ATACTCCTAC
    AGCTGCAGCT GCTCTTCCAG CAAATAACGG AGGCTACGTT AGAAATGTTG
    CTAAGAGTGC ACCAAGGGGT GGCCCAGCTG GACTACCGCA GGGTAGACCT
    CGTCCAAGGG GGGGTGGGAG GCGCCGTGGT GGCGGAGGAG GCAGTGGTGG
    TCCTGGTGGA TCCGGTGGTC GCCGTGGCAA AGAGCGTAGC CAGCCAAAGT
    CTGCCGAAGA ACTTGATGCT GACTTGGAGA AATACCATGC AGATGCGATG
    CAGACCAACT AGATCTTCAC GGTGTTGATA TTTCAACATG AAATCTGAAG
    GATGTTTATC TGCTTGTTCC TGCTATTTGT GCTACCATGT TCAGTGGCAA
    CAACAAAACC TTTGTTTGTC GGGTCTTGGT TTACTGAATT GTACGGTTTT
    ATGTGTCTAC ATAGAACTAG AGTTAAGTGG ATGCTGGTGA ACACTGTTAT
    GAATATTACT TGGTTGCCAC TTATGTTCCT TTTTCTGCGG AGTGAAGGCC
    TGCTCGAGTT GCTCCACATA CAGAAGTTAC TGAAGATGTA TGAGGTGCTC
    GTATCTTCTG ACTCCTTTAA CATACATCAT CTTCAACGGC

    Gene models with high sequence identity

    1. AT5G59950.5 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 2e-29; Score: 127.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily RNA-binding domain, RBD 1e-06
    HMMPanther RNA AND EXPORT FACTOR BINDING PROTEIN 1.4e-21
    HMMPanther RNA AND EXPORT FACTOR BINDING PROTEIN 1.4e-21
    HMMPanther RNA AND EXPORT FACTOR BINDING PROTEIN 0.0001
    HMMPanther RNA AND EXPORT FACTOR BINDING PROTEIN 0.0001
    HMMPanther RNA AND EXPORT FACTOR BINDING PROTEIN 1.5e-07
    HMMPanther RNA AND EXPORT FACTOR BINDING PROTEIN 1.5e-07

    See the detailed result >

    AT5G59950.5

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Computational Description
    RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G02530.2).
    Link
    InterPro Scan - TAIR