K13306

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K13306

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K13306

Determination of introduced cDNA(s)

  • J013053H16 - Rice Full-length cDNAs - Original: J013053H16

    full reading [+] show sequence

    Nucleotide sequence: J013053H16 - full reading 
    GAATATCAAA GATTGGGGCT CATCCCTTCC ATCACTTTGT AGTTATCAGC 
    ATCTAGCAGA CTTTGGCTAT GTACTAAACT CATTTTTTTT GTGTAGTTTC 
    CTCTATAATT GCAAGGAACA AACATGGTGG ATCTACTAGA GGTATATGTT 
    CAGTGGTCAT AGTAGAGACT ATCCAACAAA TAGTATCTTT TATTCAGAAT 
    CACAGGAGCA GAAGCATGTC AAGGAGGAGA CTCATCGTCT GCGGCAGCTT 
    CTCGTCGAAA TTCACACCGC TCTGGAGGCA GCCAAGGGGT GTGCCATCAC 
    CAATTCATGG CTACTACGCT GGCTACGCGA GCTTGAGGAC GCCGCATGTC 
    GAGGCGATCA GACACTGCGC AACTGGAGAG ATATGTCCAG CAAGGTGAGC 
    TCCATCATCG ATTCTAGTAA CTCCTTCAAA CGCATCAAGA TCGCAGCATC 
    GCAGCTGATT CCATCCAAGG AATCCACCAT GAAAGTTTCT GCCACTGTCA 
    AGAAGCTAGA AGCAGTAGCT TCTGGGATCC CCAAGTTCAC TCAGCTTCTC 
    AGCTTGCAGA ATGACCAAGC AGTGTTACAT CATCGACCGG TTATCATCTT 
    TGTTTCGATC CATGACAGGG TAGTTGGCAG AGTCGATGAG AGGAAACAGG 
    CCATCGAATT CTTGCTTCAC ATAGACAAGA ATGGATCATC CTCTCCAGAT 
    GGTTGTGTGC TTCCCATTTG GGGTGTCAAA GGAGTAGGTA AAACCACGAT 
    TGCGCGGCTC GTATGCGACG ATCGCAAGGT GAGGAGCCAT TTCTCAATGA 
    TTATATGGGT GAATTGCAGA GAATATACTA GTCCAGCCAT GGCCTTGGTA 
    AAGTCATTGT GCAAGAAGCT TGGTTTGAGT TCTAACGTAA CCATTAATCT 
    TTCAAGTGTG ATCAGAAAGG CTAAGAATGG AGAGATTTCT ACTTGTTCTT 
    GATGGTGCTT CTAGCTACCC CAGGGGAATG AATGACATAC TCGATACACT 
    GTTCATGAAA AGTAGAGCAG GAAGCAAGGC CATCATTACC ACTATGTACC 
    AACATCTGGC AACTAAGATC AATAAGCATG AAAACTTACC TGTAGGGTTC 
    CTGGCAATGG AAGATCTCGG CTGCATGTTC ATGGAAAATG CCCTGGGTGG 
    TGCACACCCT GAAGAATACC AGAAATTACT TGTTATTGGA AAGAAGATCG 
    CTGTGACATT GAGGGTGTGC AGCCCTTTAG CTGCAAAAGT TGTGAGTGGA 
    CTGCTTCGAG AAAACCTCAA TGAGAAGTAC TGGTACATTG TTCTGAATCG 
    CTGTCAGCAG TTCGTCGCAT CCAGTTCCAG GTTTGTTACT CCATTTATTC 
    TGGGTTGTAA GCTTCTTCCC AAACACCTGC AACGCTGCTT TGGGGTGTTG 
    GGTACATACC CTCGCTGGAC CTTCACAAGG GAGGAATTGA TAAGCTATTG 
    GATGAACAAC TGTGTCGTCG TCAGTGAAAA TTGTATGAAA AATAGCATAG 
    AGAATGTTGC GACTGATTAC TTTGATGATT TGGTGAGGAA GGCATTCATA 
    CAACCATCCC ACATCCCAGG GCTGTACAAA GTGGATGACA TGCTAAGAGG 
    CATAGCTCTG TACATAGGTC CAATGCCTGT TCCAAAAACA AGAATACATT 
    TAGCGAATTT GATTGGGGAA GGATTTTCCA TCCACGAAGA CTTTTGGTTG 
    ATGAGACTAG CAGAGTAGGG TTATAGATCA GAGCCTAGTT GAAATAAAGT 
    TATAAGGTTT GATATTTGTT TC

    Gene models with high sequence identity

    1. AT3G14460.1 [+] show detail - LRR and NB-ARC domains-containing disease resistance protein
      E-value: 2e-13; Score: 74.70

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam NB-ARC 6.9e-10
    HMMPfam NB-ARC 1e-13
    superfamily P-loop containing nucleoside triphosphate hyd 1.6e-09

    See the detailed result >

    AT3G14460.1

    Model type
    Protein coding
    Short Description
    LRR and NB-ARC domains-containing disease resistance protein
    Computational Description
    LRR and NB-ARC domains-containing disease resistance protein; FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis, defense response; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: NB-ARC domain-containing disease resistance protein (TAIR:AT3G14470.1); Has 38623 Blast hits to 22788 proteins in 858 species: Archae - 54; Bacteria - 2838; Metazoa - 8237; Fungi - 658; Plants - 25379; Viruses - 2; Other Eukaryotes - 1455 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR