K12203

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide) abnormal (PATO:0000460) (Rosette leaf::Others)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)
T2
	whole plant (PO:0000003)	increased height (PATO:0000570) (Adult plant::Plant height::tall)
	cauline leaf (PO:0000013)	epinastic (PATO:0000945) (Cauline leaf::Shape::epinastic) abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide) epinastic (PATO:0000945) (Rosette leaf::Shape::epinastic) dark green (PATO:0001249) (Rosette leaf::Color::dark) abnormal (PATO:0000460) (Rosette leaf::Others)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Silique::Shape::narrow

Original: K12203

Determination of introduced cDNA(s)

J013029J19 - Rice Full-length cDNAs - Original: J013029J19

full reading [+] show sequence

GTAGTGAAGG GGCTCATCAG CACTGGACGA TTGGAATTAA TAAACGGGGG 
AATGTGCATG CATGATGAAG CGACCGTGCA CTACATTGAC ATGATAGACC 
AGACTACGCT CGGGCACAGG TTCATCAAGG AGGAGTTTGG TCAGATTCCA 
AGGATTGGTT GGCAGATTGA TCCGTTTGGG CACTCCGCAG TTCAGGCTTA 
CCTCCTAGGC ACAGAAGTAG GATTCGATGC TTTTTATTTT TTCCGGATTG 
ATTACCAAGA CCGTGACACA CGGAAGGGAA CAAAAGAGCT CGAGGTTGTG 
TGGAGGGGCT CCAAGACCTT CGGCTCATCA GCTGACATCT TTGCTGGCAT 
CTTCCCAAAA AATTATGAAC CACCTCCTGG TCAGTTTTAC TTCGAAGTTG 
ATGATACTTC CCCAATCGTC CAGGATGATC CCCTTCTTTT TGATTATAAT 
GTGGAGCAAC GGGTGGATGA CTTTGTTGCT GCAGCTATAG CACAGGCAAA 
TATTACAAGG ACAAATCACG TTATGTTTAC AATGGGCACA GACTTCAAAT 
ATCAATATGC AGAAAGTTGG TTCAGACAGA TGGACAAATT AATTCACTAC 
GTTAATAAGG ATGGCCGTGT CAATGCTCTG TATTCCACAC CTTCGATTTA 
TACTGATGCA AAACATGCTG AAAATGTGCC ATGGCCTCTC AAGACTAATG 
ATTTTTTCCC GTATGCAGAC AACCCAAATG CATATTGGAC AGGTTACTTC 
ACAAGCAGAC CTGCCTTAAA ACGATACGTT CGTGTTATGA GTGGATATTA 
CTTGGCAGCT AGGCAGTTGG AATTCTTTAA AGGGAGAAGC AACTCTGATC 
TCACAACAGA TAGTTTAGCT GATGCTCTAG CTCTTGCTCA GCACCATGAT 
GCTGTTACAG GAACGGAGAA GCAACATGTC GCAAATGACT ATGCAAAGAG 
ATTATCAATT GGCTATACAC AAGCCGAGAA GCTGGTTTCA TCCTCTCTCT 
CTTGCTTGAG CCAGTCAGGC TCAAAATCAC ATTGTCCGTC CCAAACAACG 
AATTTTGAAC AGTGTCCGCT CCTAAATATT ACATATTGCC CCCCTTCCGA 
GATGGACCTT TCTCAAGGGA AAAGTTTGGT TGTGCTTGTG TACAACTCTC 
TTGGGTGGAA ACGGGAGGAT GTCCTTCGCA TACCGGTCAT CAGTGACTCA 
ATTGTTGTTC ATGATTCTGA GGGAAGAGAA GTTGAATCAC AACTTCTGCC 
TATAGCTAAT GCATCTTTGT ACATGCGGGA GAAACATGTC AAGGCTTACC 
TAGGCATGTT ACCAGCTGCA AAACCCAAGT TTTGGCTTGC TTTTCCAGTT 
TCTGTACCAC CTCTTGGTTT CAATACGTAC TTTATATCAA GCGGGAAGAA 
ATCAGCATCA GTCTCTTTGA TGTCCACTCT GCACTCATCT CAAGGAAGTG 
AAAATAGTAA CATGCAAATT GGGCAAGGAC AGTTGAAACT TCAAACAATG 
CAGCTGGAGC ATTATCTCTG TACTCCAATA GTAAGACCCA GGTTGAAGCA 
AATTTTGAGC AGAAGTACAA GTATTACATA GGACAGGATG GAAATGGAAG 
TGATCCTCAG GCTTCTGGAG CATACATATT TCGCCCTAAT GGCACAGTTC 
CTATCAAGAC TGATGGACAG GTTCCTCTGA CAGTTCTCCG TGGGTCCATA 
TTGGACGAAG TGCATCAGCA GATTAATCCA TGGATATATC AGATCAACAG 
AGTTTACAAA GGAAAGGACT ATGTGGAGAC TGAATTTATA GTTGGACCAA 
TACCAGTGGA TGATGGAAAT GGAAAAGAAC TATCCACTGA AGTCGTTACA 
AACATGGCAA CAAACAAAAC ATTTTACACT GATTCCAGTG GACGTGACTT 
CATCAAAAGG ATACGGGATT ACCGGTCAGA GTGGAAGATC GAAGTGCACC 
AGCCTATCGC TGGAAACTAT TATCCTGTTA ATCTTGGCAT TTATGTGGAA 
GATGGAAGCA GAGAGTTATC TATACTTGTA GACAGGTCTG TTGGAGGTGC 
CAGCATAAAG GATGGACAGA TAGAGCTAAT GCTACACAGG AGACTACTTC 
ATGATGATGG TCGTGGTGTT GCAGAGGCAT TAAATGAAAC AACCTGTTTT 
GATAATCAAT GTGAAGGACT AGTTATTCAA GGAAAGTATT ATCTCAAAAT 
TGATCCACAA GGTGAAGGAG CTAGGTGGCG GCGGACATTT GGCCAGGAAA 
TATACTCCCC TCTTCTTATT GCTTTTGCAG AGCAGGATGG AGGTAATTGG 
GTGAATTCAC ACGTTACAAA ATTCTCTGCA ATGGATCCGG CCTACAGCTT 
GCCTGATAAT GTTGCATTGC TTACTCTTCA GGAACTTGAA GACGGAACTG 
TTCTTCTTCG GTTGGCTCAC CTATACGAGG CTGGAGAGCA CAAGGATCTT 
TCAGCTCTAG CTAGCGTCGA CCTGAAGAGA GTATTTCCAG ACAAGAAGAT 
TGTCAAGATT GTTGAGACAA GCCTATCAGC GAACCAAGAA CGTTCAGCCA 
TGGAGAAAAA GAGGCTGAAG TGGAAGGTGG AAGGCCCTCC TGCTGATGAA 
AAGATCGTCC GGGGAGGCCC CGTAGATCCT TCCAAGCTCG TCGTTGATCT 
GGGCCCCATG GAGATACGCA CATTCCTCAT CAATTTCGCC CCGCAGTCCG 
GCAAACAGTT GATGTGAGGG GTGACATGGC CTTGGCACCA ATGTTTTATT 
TTTAGCTTGA GTTCTTCTCA TGGTGATGAG CAATAAGAAA TAATGTGGCC 
ATGGTGATTG GTGACCGAAT GCAGAGATGC ACTGGTAGCA TCCAACCACT 
GAGCCCTGTT TGTAGCTTGT AAATGAATTT GGCTTCACCT TAAGTTGAGC 
TCGGTTTCAG TGAAGATAAG TGACTG

Gene models with high sequence identity

AT5G13980.2 [+] show detail - Glycosyl hydrolase family 38 protein
E-value: 0; Score: 522.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Glycoside hydrolase/deacetylase, beta/alpha-barrel	4.7e-76
superfamily	Families 57/38 glycoside transferase middle d	5.5e-30
superfamily	Glycoside hydrolase-type carbohydrate-binding	6.3e-28
superfamily	Glycoside hydrolase-type carbohydrate-binding	1.8e-103
HMMPfam	Glycoside hydrolase, family 38, core	4.2e-58
HMMPfam	Glycoside hydrolase, family 38, central domain	1.2e-21
HMMPfam	Glycosyl hydrolases 38, C-terminal	7.6e-16
HMMPfam	Glycosyl hydrolases 38, C-terminal	3.9e-72
HMMSmart	Glycoside hydrolase, family 38, central domain	1.9e-23
Gene3D	Glycoside hydrolase, family 38, core	2.8e-75
Gene3D	no description	2.4e-30
Gene3D	no description	9.4e-24
Gene3D	no description	1.2e-67
HMMPanther	LYSOSOMAL ALPHA-MANNOSIDASE (MANNOSIDASE ALPH	1.2e-168
HMMPanther	ALPHA-MANNOSIDASE	1.2e-168
HMMPanther	LYSOSOMAL ALPHA-MANNOSIDASE (MANNOSIDASE ALPH	2.8e-251
HMMPanther	ALPHA-MANNOSIDASE	2.8e-251

See the detailed result >

AT5G13980.2

Model type: Protein coding
Short Description: Glycosyl hydrolase family 38 protein
Computational Description: Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: apoplast, cell wall, plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT3G26720.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR