K10240

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10240

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10240

Determination of introduced cDNA(s)

  • J023041G22 - Rice Full-length cDNAs - Original: J023041G22

    full reading [+] show sequence

    Nucleotide sequence: J023041G22 - full reading 
    GAGTGGAAAT CAGTTTCCAC TTTCTTCCAA AGCCGAAAAA TCGAGAGAGA 
    AAGAGCAAAA CCCTAACCGC GGCGCTCCGC CCCCTTCCGC CGCCGGATTC 
    CTCCTCCTCC TTCGTCCGCC TTCGCCGGCG CCGCCCTGCT CCGAAGGAGC 
    CCAGGCCTTG TCGCCGCGTC GCTTGCCCCG CCGCCGGTTT CAGCAGCAGC 
    CACCCCCACC ACCATGTCTT CTCAGGTCGA CAACCGTAGC CAATCTGCTG 
    GAAAGCGTGC CCGCACCGAC GGTGGGCGGC GTGAGGACGA CTGGGTTTGC 
    CCCAGCTGCC AGAACGTCAA CTTCGCCTTC CGCACCACCT GCAACATGCG 
    CAATTGCAAC CAATCCAGGC CCACCGACTA TACGAAGGAT ATGCAGAAAC 
    CTATGCAGAC ACCGCCGCCC CATTTCCCCA TGTCAGGGGG ATACATGAGC 
    CCAGGGACGC CGCCATCCAT GTACCTCGGG GGTGGTGCTC CCCCTTATGG 
    CACCTCCCTC TATGGCGGAC CTGCTTTACC ACGTTATGGT ATTGCTCAGT 
    TCCCTGGGGG TTCTGGATAT CCATATGGCT ATGGTGGCCG CCTGCCAATG 
    GGGAGCCCCT ATGGGCCGCC GATGCATATG GCAGGGCCTC CATATTCTGC 
    TGGATCCATG ATGGGACCAG GTGGAATGTA TGGGATGCCC ATGGACAGAT 
    ATAGCTTGGG CTTACCTGCT GGTCCTGGTC CAATGGGCGC GAGGGCTGGT 
    TCATATTCCG AGGAAGGATC CCAGAAGAAG CCTGCAGGAG CTGGGCGTGA 
    TAATGATTGG AAATGCCCTA ATTGCAACAA CATTAACTTT GCATTCCGGA 
    CAGTCTGTAA CATGAGAAAG TGCAATACAC CAAGACCTGA AAACCAGGGG 
    TCCAAACCTG ATGGTGCAAG AGGTCCAAAA CCAAAGATGC CAGAAGGTAG 
    TTGGAAGTGC GAGAAGTGCA ATAACATAAA CTATCCATTC CGCACAAAAT 
    GTAACCGTCC AAGTTGCGAG GCTGAAAAGC CATTTCAGAC AAACAATGCT 
    AATGAGTCAT CTGCTGATCA GGACAATCAG TGAGTCCTAG AACAGTTATG 
    AGGGTCAAGA AGGTCCAGCG TCGTCGTCAA GGTTCAGTCT GAATGTCTGG 
    GGTCTATCTG TGTCAGTAGT CGCTGCTGTA TCCCCTTGAG ACCTTAGTTG 
    AGTCGTCGTC CTAATGGTAA ACGTTTTGGA GTGGCAACTG GAGTCATGGA 
    TTTCTTTATT GCTACAGATT TTGGTTAAGA ACATCCCTTG TGAATTTGTC 
    ATATACTTCT GAAGCTTGGT TGCTTTGTCT TGGTTACTGG TACTCTGGGA 
    AAATGGCAAT TTATGATATA AATTTCAATT AGC

    Gene models with high sequence identity

    1. AT1G67325.1 [+] show detail - Ran BP2/NZF zinc finger-like superfamily protein
      E-value: 1e-67; Score: 254.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ZINC FINGER PROTEIN 5.4e-54
    HMMPanther ZINC FINGER PROTEIN 5.4e-54
    HMMPfam Zinc finger, RanBP2-type 8.5e-06
    HMMPfam Zinc finger, RanBP2-type 2.2e-06
    HMMSmart Zinc finger, RanBP2-type 0.038
    HMMSmart Zinc finger, RanBP2-type 0.0011
    HMMSmart Zinc finger, RanBP2-type 0.0014
    superfamily Znf265, first zinc-finger domain 4.9e-08
    superfamily Znf265, first zinc-finger domain 5.4e-08
    superfamily Znf265, first zinc-finger domain 2.6e-06

    See the detailed result >

    AT1G67325.1

    Model type
    Protein coding
    Short Description
    Ran BP2/NZF zinc finger-like superfamily protein
    Computational Description
    Ran BP2/NZF zinc finger-like superfamily protein; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: TBP-associated factor 15 (TAIR:AT1G50300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR