K08136 - RIKEN Arabidopsis Genome Encyclopedia

K08136

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K08136

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K08136

Determination of introduced cDNA(s)

  • J033107H21 - Rice Full-length cDNAs - Original: J033107H21

    full reading [+] show sequence

    Nucleotide sequence: J033107H21 - full reading
    GGATTTCACT CGCCGCCGCC GCCGCCGCCT CCCTACTCTC TGCCGCCGCC 
    GTCGCCGCCG CTTGCTCCGT ACTCCTCCTC TTCAGCGGCG ATGAAGGGAC
    GGCAAGGCCA GCGCGTGAGG CTGTACGTCC GCGGCACCAT CCTCGGCTAC
    AAGAGGTCGA AGTCGAACCA GTACGAGAAC ACGTCGCTGC TGCAGATCGA
    GGGGGTGAAC ACCAAGGAGG AGGTTGGGTG GTACGCCGGG AAGCGCATCG
    CCTACGTCTA CAAGGCCAAG ACGAAGAGCA ACGACTCCAC CATCCGCTGC
    ATCTGGGGCA AGGTCACCCG CCCGCACGGC AACTCCGGTG TCGTCCGCGC
    CAAGTTCCGG TCCAACCTCC CGCCCACCTC CATGGGCAAG AAGGTCCGCG
    TCTTCATGTA CCCCAGCAGC ATCTAAAAGC ATCCAAGGTT TCTTGCCTAT
    GCTGCGAAAC TGATAGTTGT CACCGTGGAG GGTTTTATAT CAGCTAGTCA
    CTTGGTTAAC CAGTCAGAAA TTTAAGCGGT TTTGAGGAGT TTTAGCTTTT
    CTTTTTATTT CGGACTATTT GCTGTATCAT GATGACAATT ATTTGAAGGC
    TTTTTAGCGG ATTTGAAGCT ACAGAGGTTT AGCATTTGTA TCGTGATCTC
    AGCCGTTTGA TATCGTATCT GTATATCTAA ATTTGGTTGG CACTGCTCGT
    TGAGTATATT TGAAAATGAT AGGCAGATGG ATTCAGTGGT TC

    Gene models with high sequence identity

    1. AT1G41880.1 [+] show detail - Ribosomal protein L35Ae family protein
      E-value: 6e-51; Score: 197.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Ribosomal protein L35Ae 1e-65
    BlastProDom Ribosomal protein L35Ae 5e-48
    HMMPfam Ribosomal protein L35Ae 2.3e-44
    PatternScan Ribosomal protein L35Ae, conserved site 0

    See the detailed result >

    AT1G41880.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L35Ae family protein
    Computational Description
    Ribosomal protein L35Ae family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit, membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L35Ae (InterPro:IPR001780), Ribosomal protein L35Ae, conserved site (InterPro:IPR018266); BEST Arabidopsis thaliana protein match is: Ribosomal protein L35Ae family protein (TAIR:AT3G55750.1); Has 766 Blast hits to 766 proteins in 257 species: Archae - 25; Bacteria - 0; Metazoa - 323; Fungi - 146; Plants - 149; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR