K06145

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06145

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06145

Determination of introduced cDNA(s)

J023063G02 - Rice Full-length cDNAs - Original: J023063G02

full reading [+] show sequence

GAGCAATTCC ACTCCCCCAC CACCGCCATC CTCCCCCCCG CCGCCTCCAC 
CCGCCGGCGT CCACCTCCAT CTCCTCCTCC ATCACCGCCA CCGCCGCCAT 
CCATACGGGC TCTCCCGCTC GGCTCGGCTA CTCCACCACC GGCAACGCTC 
CCCGTGCCGC ATCCATCCCC CCCCCTCCAA GCTTCCAGTC GCAGGAGAGA 
AGGCGGCCGC CGGAGTAGGC ACACGCAACA AGCAGGTTTC CCTCACCGGC 
GGCGGCGGCG GCGGAGGCGG CGAGAAGCCG GCCATGGCGA CGAAGCAGCA 
GGACGCTTCG ACGTCCGGCG CGGCCATGTC CATGAAGGAG TACCTCAAGA 
GGTACCAATC CGACGACGCG CAGGGCAAGG CCAAGAAGAA GAAGAAGAAG 
AAGCCCAAGC CCGCGGCCGC CGTGGGCGGA GGTGTGCTTA TCGTCGACGA 
GGACCCCACG TGGCACAAGC CCGTCCAGAT CGAGGAGGAG CCCGCGTCGT 
CCGGGGATGA GAGACCGTTG GTGGACGAGG ACATCGAGGT CAAGCGGATG 
CGCCGCCTGG AGGCGATTCG CGCGGCGCGG CCGTACAATG CTATCGCTGA 
GGACGGAAGC GGGTGGGTCA CCGTGGCCGC CCCCGAGGAC TCCGATGGTG 
GTTTAACCGG TCGCCGCCGC AGAAATGACA CGCCCTCACC GGAGCGCGGG 
GGTGCTGGAA GGAAGGATCT GTCTCCTCCG CGGCGGAGGC AGCGGCAGGA 
TACGCCCTCG CCGGACCCGA GAGATGCTGC GGGTAAGGAT CTGTCGCCGC 
CGAGGCAGAG GCGAAGGCGG CAAGACACGC CGTCACCAAA GGGTAGTGAG 
GTAGCTGGGG GGCATGATGA TTTGTCACCA CCGCGGAAGT CTAGGCAGCA 
ACGAGACCCC TCTCCTCCAC GCAGGCTCTC TCGCCATGAC TCCAAGGAAT 
CCCAGGACAT TTCACCACCA CGAAGGCGTA CCAGGCATGA CTCAGAGGAG 
CCACAGGACC TCTCTCCACC ACGCCGGAAG GGGCGGCATG ATTCTGAAGA 
ACCCAAAGAC CTCTTGCCAC CATGGAGGCG CGTGAGGCAT GATTCTGAGG 
AACCCAAAGA CCTCTCGCCA CCACGGAGGC GCACGAGACA TGATTCAGAA 
GAGCCCGAAG ACCTCTCTCC CCCACGCAGA CGGACGCGGC ACGACTCTCA 
TGAACCCAAG GACAAATTGC CACCACTGAA AAGGCAGGCT TTGGGTGATG 
GGGACATTTC ACCTCCAAGG AAGGGTAGGA AGGAAGTGGC TCCGAAGGAG 
GTGAGGAAAG CTGGGTTGAT GACAGCAGAG GAAGTTAAAG AGGACATCAG 
GAAGATTAAG GAGGATGAGA GGCTCAAGTT TGCTGCACAG GATCCCTCAG 
TGATTGGGAA AGGGGCAAAA GCAGTATTCC GAGATAAACA AGGAAAACGA 
ATAAGTGAAG AAGATATGAG GAAGGCACGA AGACACGAAA CCAAAGGAAA 
TACATATAGA ATGGGGTAAA GGGTTGGTGC AGAAGCGAGA AGCTGAGGCT 
AGATTACAGG AGCTTGAATC TGAAAAGAGG ATGATCCTGA GCTCGACACC 
ATGCTAAAAA ACAGAATCCG GTGGGGTGAT CCTATGGCTC ATCTTGTCAA 
GAGGAATGAT ACAGACCTCC TTCTGGAGGA CTTGGGAGAT GATGAAAAGA 
TGAAAGAATC TGGCTTCATT GTTCCCCAAA ATATACCTAG TCACAGCTGG 
CTGAAGCGTG GTGTAGATCC TCCTCCAAAC CGCTACGGCA TAAAGCCTGG 
TCGTCATTGG GACGGAGTGG ATCGCAGCAA TGGATTTGAG AAGGATATGT 
TTAAGCTGAA GAACGAGAAG CAAGCAACGG AGCAAGAGGC CTACCTTTGG 
TCTGTCGCAG ATATGTGAGC ATAGCTGTTC TTCAAAGAAG CCAAGGTAGC 
TTGTGTGCCT TGTTAAACGA AGTAGTATAC TGTAAAATGC TTGGAAGGAA 
GGAAGCACGG CCTCTCGGCG TAGCACAGCG TGCTTGAAAA CTCAAATGTA 
GAATCAAACT TGTTGTGCAT TGGTTGAAAT CTTTTTGGCA TTTTTCTCTT 
TGCCACTCTT AAAAACATTT TGTAACATCG ATGAACATCT TTACTCGGAA 
TTAGAAGCTG ATCTTTTAT

Gene models with high sequence identity

AT1G31870.2 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
E-value: 4e-97; Score: 352.00

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
HMMPfam	Protein of unknown function DUF2050, pre-mRNA-splicing factor	6.4e-27

See the detailed result >

AT1G31870.2

Model type: Protein coding
Computational Description: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2050, pre-mRNA-splicing factor (InterPro:IPR018609); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR