K05208

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K05208

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • hyponastic (PATO:0002329)
    (Cauline leaf::Shape::hyponastic)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
  • abnormal (PATO:0000460)
    (Silique::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K05208

Determination of introduced cDNA(s)

  • J013002N10 - Rice Full-length cDNAs - Original: J013002N10

    full reading [+] show sequence

    Nucleotide sequence: J013002N10 - full reading
    GACTCCACCA CCCCACGCTT CCTTCGCCGC TAAGTATATC CCTCCCGGCG 
    ACCGCGAATC GGATCTTGAG AGTGAGAGAG AGGTTGGGGG AGGTGGATGA
    GAGGGCGGAG ATGACGGTGA TGGAGCTCAA GAAGCTGCCG CTCGGGTTCA
    GGTTCCACCC CACCGACGAG GAGCTCGTCA GGCACTACCT CAAGGGGAAG
    ATCACGGGGC AGATCAGGAG CGAGGCCGAT GTCATCCCCG AGATCGATGT
    CTGCAAGTGC GAGCCGTGGG ATCTCCCTGA TAAGTCTCTG ATCCGCTCCG
    ATGATCCGGA GTGGTTCTTC TTCGCGCCGA AGGATAGGAA GTATCCCAAT
    GGGAGCAGGT CGAACAGGGC GACGGAGGCC GGGTACTGGA AGGCCACCGG
    GAAGGACAGG GTGATCAGGT CCAAGGGTGA CAAGAAGAAG CAGCAAGTAA
    TTGGCATGAA GAAGACGCTC GTGTTCCACC GGGGGCGTGC GCCGAAGGGT
    GAGCGGACTG GGTGGATCAT GCATGAGTAC CGCACCACCG AGCCGGAGTT
    TGAGTCCGGT GAGCAGGGAG GTTACGTTCT CTACCGGCTG TTCCGAAAGC
    AAGAGGAGAA AATTGAGCGA CCCAGTCCGG ATGAAGTGGA TAGAAGTGGA
    TACTCACCCA CTCCTTCTCG TTCAACTCCT GATAACATGG AACCAATTGA
    AGACGGAAAT ACACCATTAA ACAGGGAATC TCCAGAATCT GCTCTGCATG
    AAAGCCCAAT TGATTTGCCT GCTCTAACTG AGGCTCAAGC TGCGCCAATT
    ACAAGGTGGC TTGCAGACAG AACTGATAAC GCGACAACAA ATGAAGTAAA
    CATCTCTCAC ATGCCTCATC ATGGGCTTGA TGGAGGAGCT AAGGCTAGCC
    CTTCAGCTGG TGCTTTCCCT CAGCTGATTG GTTCACAACA GAATATCCAT
    GATAATAATG AATTAGCCAC AGTTTCTGCA CCCATGCTAC CACATGAAGA
    CTTCAATAAT TTCCCTCTAG GAGCCATTGG TAATTTTGAT GGCCATATGA
    ATCCTCGAGA TCCAGTGGAG GAGTTCTTGA ATCAAACCAT TGCTGATCCA
    GATGAGCATT CATCAACAAC ATCAAAGGCT CAGTATGATT CGGACACTGG
    AATCATACCA ACTGAGTTTG AGAACCATGG GGTGATGCAG GGTGAATTCA
    TGGATGATCT GAGTGGGTTG GAAAATTTAG ATTTCTGGCC AGATGACCGA
    AATCCCCAGT TGAGTGCACT GTATGAGGAC ACACCATTGC TGCCTTATGA
    TAGCACCGAC CAGGATGTGC TCTCCATGGA CTCTGGTGCT GAATCCTTGC
    AAGATCTATT CAACAGCATG GACGATTCAA ACGCGAGGAA TAATGTATGG
    GGCAACGAAC CATTCCTCCA GGGGACTGGA TTTCCCATGT CTTGGCCGTT
    ACAGCCGAAC TCCGCATTTC CAAACCGGGG CACTGCAAAT AGGAGGCTCA
    TGCTACAGCT ATCAGAATCA TTATCTCCTG ATTTTGATGT GAGCATGACT
    AGAGATGAGT GTGAAGATGA GGAACCAGGT ATTGTTGTAA CTTCGAAGTA
    TGTGAATGAA GCTCCTGAGG AGTCAACTGC AGAAAAGGAT ATGCCTTCTG
    ATGGAGATGA TGCTGAGCCA ACGGGTATTA CTATCCTGAG GCGACGCCAT
    GCTCCAACTG CAAGTTCGTT TTCTGATGGA GATGATGCTG AGTCAACGGG
    TATTACCATC CTAAGACAGC ACCAAGCTCC AAATGCAAGC TTGCTTTCTG
    ATGGAGATGA TGCTGAGTCA ACGGGTATCA CTATCCTAAG ACGACGCCAA
    GCTCCAACTG CTAGCTCAGC TAGTTCATTT ACTCAACAGG GTGCTGCAGT
    GCAAAGGGTG CGGCTACAAT CAAACCTTGA TGCAGCACCG TGTTCTAGCG
    TTGATGGTTC ATCAAGTTGC ATCATAAATG AAGGTGAAAG TGAACGCACC
    ATGGAGAAAC CTGAGATTGA AGAGAATGCA GGAAGTACCT TGGCTGAAGG
    TGGGACTTGC CATGAGGATG ACCAGAAGGA GCATGATGCT TCAGCAGCAA
    ATGCTAAATC TGTTCTGAGG CTGCGGAAGA CAGCAGAGGG AAGCGACAAG
    GAGAACAAGC AGGAGGAAGA GGAGGGTGTT CTTGCTTCAC ATGTGAGAGC
    ACCAGGGAAT AAGAGGGGAT TCCCATCGTA CATCATTTGG CTGGTTCTCT
    CTGTGGCTCT GGTCCTGCTT ATCTCCCTTG GGATTTATGG ATGGGTGTAA
    ACAGCTGCTC CCCTGATGGT CTTCAAGATG ACCATGCTTA CTGGCACAGG
    CTCCCAACAT TGACCTGCTG TGCTGAGTGA CCTGTTGTAC ATATTGCGTC
    TTACGCCCTT GTGTTTAGAC GGCGGTTGCT AGACACCCTG GAGTGTTTGT
    TCCCCTTCCA GCGTGCTGCG GCAGAAGAAA AATCCAAAAA CAAAAAAAAA
    AAGAGGGGCG AAAACGAAGA AAAAAGAAGA GGTAGTGAAT GAGGAAAGTT
    GTTGTAGATG TTCTGTGACT TAGGTGCATG GTAGTATTCC TTCCTGCTGT
    TATTGCAGAT GTTAGTAGCC ACATACCCTA GTTGTTCAGC AGTTGTAAGT
    CAGGTTAGGG ATATGGTTAC TTTTGTCTAT GTAATGTTCT GTAGCATTAT
    CTGAACCTGC TTTATCGGAT GCAATTTCGT TTTCCTTTCA GTAAATCTCT
    GTGCTGCAAA CTGTAGTTCC TGTGTAAGTT TTGATGTGTG AAATGTTAAT
    ACTTCTAGTA CTAATATACT ATTGATGATG

    Gene models with high sequence identity

    1. AT1G33060.2 [+] show detail - NAC 014
      E-value: 2e-63; Score: 241.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan No apical meristem (NAM) protein 57.532
    superfamily No apical meristem (NAM) protein 3.7e-63
    Coil coiled-coil 0
    HMMPfam No apical meristem (NAM) protein 2.7e-50

    See the detailed result >

    AT1G33060.2

    Model type
    Protein coding
    Short Description
    NAC 014
    Computational Description
    NAC 014 (NAC014); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC transcription factor-like 9 (TAIR:AT4G35580.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR