K01810

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K01810

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K01810

Determination of introduced cDNA(s)

  • J033033H14 - Rice Full-length cDNAs - Original: J033033H14

    full reading [+] show sequence

    Nucleotide sequence: J033033H14 - full reading 
    GGGCCTCGGC GCCCGTTTCC TCGCTACTTC GCCGCCTGCG CCGATCTCCA 
    TTAATCCATC CATCCCGCGA GGGGGAGCAG CGGGGTAGGG GTGCCGTCGT 
    CCTGCCGCTT CCGCCTCCGG ACTAGGGATC ATGTCAGGAA GAGATCGTCT 
    GCCACGTCGC TTTATAGAGG ATGGCAGGGG CTACCCTGAC ATCCGTGTAG 
    TTGATGAACG TAGGGGCTAT CCTGACATCC GTGTAGTTGA GGATCGTAGG 
    GGCTACCATG GTATTCGTGC CATTGAGGAT CATAGGGGCT ATCCTGACAT 
    CCATGAAGGC CTTGTCATGA GGGTTGCACC TCGCTCTCAC ACGGCTATGC 
    CGGAGGAAGA AATTGAGATT CAGGGGGCCG AATTCAGGAG GCTTATGGCA 
    GATCACCGTG CTCTTGCTGA AGAACGTTTG GCCTTACACC GGGAATTACA 
    AGCTGGAAAA GATGAGGTCC GTCACTTGAA CACGATCATT GCAGACATCA 
    GTGCCAAGAA GGAAACTTAT ATCGGTGAGC TTGTTGACAA AAGGAGGAAA 
    CTTGAAGCTG AACTTAGAGC AAATGAGTCT TTAAGAGATG AGATTGTGCA 
    GCTTCGGGGT GAAATTGATA AGCACCTTGT AGTCAGGAAA GAGCTCTCTG 
    CGAAGTCTGC ATCTATCATG CATGAACTAA CCAGGGAACA ATCTAATAAA 
    CAGCAGATTC CTATGTTGAA AGCAGAGATT GATGCCCTTC GACAGGAACT 
    TGTTCATGCA AGGTCTGCAT GTGAATTAGA GCAGAAAGGA AATTTTCAGT 
    TGGTTGAACA GAAGAAAGCA ATGGAGAAGA ATATGATTTC GATGGCACAA 
    GAAATTGAAC AAATGCGAGC AGAATTAGCT AATTCCGAAG GGAGACCATG 
    GGCCCCAGGT GCGACATATG GGATGAAGCT GGGCAGCCCT GAAGTGACCT 
    TCCCTACTTC ATATGGAGAT AACTACAATA TCCATGTGGG AGGTTCCGAG 
    AAAGGTCATT CACATCTTCC TGAATCAAGC TCATGGGGTA CATATGACAA 
    CAATCGCCTT CAGTACCGTT AAGATCGCAG CTGCTATGAA AAAAGCCTCA 
    TCTATAAAAT CCCTTGTGCA TTCTCCAACT CGCAACTACA CAAACACCGT 
    GCCAACAAAT GGAGAGAGGC GGAGCGGCGG CGGCTGCCGG CGGTGGCGTG 
    GTGGTGTCGC CGTCGGCGGC GAAGGATTCG TGGCCGGAGT TGGTCGGCGT 
    GTCGTCGGAG GCGGCGAAGA CGAAGATCGG AGAGGAGAGG CCGGAGTTGG 
    ACGTGCAGGT GGTCCCCGCC GACGCCTTCG TCACCACGGA CTACAACGCC 
    GGCCGTGTCA GGGTCTTCGT CGACTCGGAC GACAAGGTCG CCAGACCTCC 
    CAAGATCGGC TAAGCTAGCT GTGCCCTAAT ATTTAATTTT AAACCCTTTG 
    TATTTTGCAT GAACAATAGA AACAGAAAAT AATTAAGCCA GTGCGAGTAG 
    TATGATCACT GTTTCACTAT AGCAATAAGA CGAGTAATAT GTATTCCCGC 
    TATAAATGAC ATATGCATCG TATGATTACT ATTGTTTTCG

    Gene models with high sequence identity

    1. AT1G55170.1 [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); ...
      E-value: 1e-43; Score: 174.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Proteinase inhibitor I13, potato inhibitor I 2e-08
    FPrintScan Proteinase inhibitor I13, potato inhibitor I 2e-08
    FPrintScan Proteinase inhibitor I13, potato inhibitor I 2e-08
    superfamily Proteinase inhibitor I13, potato inhibitor I 5.7e-20
    BlastProDom Proteinase inhibitor I13, potato inhibitor I 4e-15
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    Gene3D Proteinase inhibitor I13, potato inhibitor I 6.4e-20
    HMMPfam Proteinase inhibitor I13, potato inhibitor I 1.8e-25
    PatternScan Proteinase inhibitor I13, potato inhibitor I 0

    See the detailed result >

    AT1G55170.1

    Model type
    Protein coding
    Computational Description
    unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 13439 Blast hits to 8993 proteins in 828 species: Archae - 344; Bacteria - 1469; Metazoa - 6958; Fungi - 1008; Plants - 683; Viruses - 29; Other Eukaryotes - 2948 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR