K00818

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	present in fewer numbers in organism (PATO:0001997) (Cauline leaf::Number::few)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) present in fewer numbers in organism (PATO:0001997) (Rosette leaf::Number::few)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Others)
T2
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small) decreased width (PATO:0000599) (Cauline leaf::Shape::narrow)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide)
	fruit (PO:0009001)	abnormal (PATO:0000460) (Silique::Others)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00818

Determination of introduced cDNA(s)

J023007F10 - Rice Full-length cDNAs - Original: J023007F10

full reading [+] show sequence

GTTATGTTGT GCAGGAGGCT ATAATTGTTA TTAAGGACAT CTTCAGGCGC 
TACCCTAATA CGTATGAGTC GATCATCGCA ACACTCTGTG AAAGCCTAGA 
CACCTTAGAT GAACCAGAGG CTAAGGCATC AATGATTTGG ATTATTGGAG 
AATATGCTGA AAGGATTGAC AATGCTGACG AACTTCTTGA GAGCTTCTTG 
GAAACATTCC CAGAAGAACC AGCATTAGTT CAATTGCAGT TACTAACGGC 
AACTGTTAAG TTGTTCCTTA AAAAGCCAAC TGAGGGGCCT CAACAGATGA 
TACAGGCTGT TCTCAATAAT GCAACAGTTG AAACAGACAA TCCTGATTTG 
CGCGACCGAG CTTATATATA CTGGCGACTT CTTTCTACTG ATCCTGAGGC 
AGCTAAAGAT GTAGTTTTGG CAGAGAAACC TGTGATCAGC GATGATTCCA 
ACCAGCTTGA TTCTTCTCTC CTAGATGATC TGCTAGCCAA TATTTCTACC 
CTTTCATCAG TTTATCACAA GCCTCCAGAA GCATTTGTTA GCCGCGTTAA 
AACAGCTCCT AGGGCTGATG ATGAGGAGTT TGCTGATACA GCTGAAACAG 
GATATTCGGA GTCACCATCT CAGGGTGTTG ATGGGGCATC ACCTTCCTCT 
AGTGCTGGCA CTTCTTCTAA TGTTCCAGTG AAGCAGCCAG CAGCACCAGC 
TGCTCCTGCT CCAATGCCAG ACCTCCTTGG TGATTTGATG GGTATGGATA 
ACTCCATTGT TCCTGTTGAT GAACCAACAG CACCTTCAGG CCCTCCACTA 
CCTGTTTTGT TGCCATCAAC CACTGGCCAA GGACTGCAGA TCAGCGCACA 
ACTAGTGCGG CGTGATGGCC AAATATTCTA TGATATATCT TTTGATAATG 
GCACTCAAAC TGTGCTAGAT GGATTCATGA TTCAGTTTAA CAAAAATACC 
TTTGGCCTTG CAGCCGGTGG TGCACTTCAG GTCTCTCCAC TGCAACCTGG 
GACCTCGGCC AGGACGCTGC TACCTATGGT GGCATTCCAG AATCTCTCTC 
CTGGAGCGCC AAGCTCACTG CTGCAGGTTG CGGTGAAGAA TAATCAGCAA 
CCTGTGTGGT ACTTCAATGA CAAAATCCCT ATGCATGCCT TCTTTGGTGA 
AGATGGCAAA ATGGAACGAA CAAGTTTTCT TGAGGCCTGG AAATCTTTAC 
CTGATGACAA CGAATTTTCG AAAGAGTTCC CCTCTTCTGT CGTCAGCAGC 
ATAGATGCGA CCGTTGAGCA CCTTGCAGCA TCAAATGTGT TCTTTATCGC 
CAAGAGGAAA AACTCAAACA AGGATGTTCT GTACATGTCT GCAAAGATTC 
CGCGTGGAAT CCCCTTCCTG ATAGAGCTTA CTGCTGCAGT CGGTGTTCCT 
GGCGTGAAGT GTGCGGTCAA AACTCCAAAC AAGGAGATGG TGGCTCTCTT 
CTTCGAAGCC ATGGAGTCTC TTCTCAAGTG ATACAAAATT GAAGGATCAT 
TGTTCCTTCC AAATTGATCA GTTCATGAGC TATTGTAGGT TTGGATGCGG 
CGTTGTTTCA CAGGAGCTGG TGTGAATTGT ATTTGTTGTT CTTTGTATTA 
GATTACTGTA TTTAAACTGC TAGTTTCCTG GTTTCAAAGT TTTTTCACGA 
CGAACACTCG ACATGGCCAT TTTGTCTGCG TAATTTGTAT ATCTCGGACC 
TGAACCTCTT TTCATGCCAT AGCATATGAA ATATAAGTAG CTTGCAAACT 
CGTAATTGAT GAGGTACAGA TATCATTTTT ATCAACTACA TTGTTGTTTC 
ACTTGTCTAC TTTAAGCAAT GATTTCCTTT TATCTGCTTC CG

Gene models with high sequence identity

AT4G11380.2 [+] show detail - Adaptin family protein
E-value: 0; Score: 657.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Clathrin/coatomer adaptor, adaptin-like, N-terminal	1e-34
HMMPfam	Clathrin adaptor, beta-adaptin, appendage, C-terminal subdomain	3.1e-31
HMMPfam	Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain	5.7e-08
HMMSmart	Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain	1.9e-06
Gene3D	Armadillo-like helical	2.8e-52
Gene3D	Clathrin adaptor, beta-adaptin, appendage, Ig-like subdomain	1.8e-31
Gene3D	Beta2-adaptin/TATA-box binding, C-terminal	3.5e-30
superfamily	Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain	3.1e-37
superfamily	Armadillo-type fold	8.4e-36
superfamily	Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain	2.7e-35
HMMPanther	ADAPTER-RELATED PROTEIN COMPLEX 1, BETA SUBUN	1e-204
HMMPanther	ADAPTER-RELATED PROTEIN COMPLEX, BETA SUBUNIT	1e-204

See the detailed result >

AT4G11380.2

Model type: Protein coding
Short Description: Adaptin family protein
Computational Description: Adaptin family protein; FUNCTIONS IN: protein transporter activity, clathrin binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain (InterPro:IPR008152), Armadillo-like helical (InterPro:IPR011989), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553), Clathrin adaptor, beta-adaptin, appendage, Ig-like subdomain (InterPro:IPR013037), Clathrin adaptor, beta-adaptin, appendage, C-terminal subdomain (InterPro:IPR015151), Beta2-adaptin/TATA-box binding, C-terminal (InterPro:IPR012295), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Adaptor protein complex, beta subunit (InterPro:IPR016342), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041); BEST Arabidopsis thaliana protein match is: Adaptin family protein (TAIR:AT4G23460.1).
Link: InterPro Scan - TAIR