K00803 - RIKEN Arabidopsis Genome Encyclopedia

K00803

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K00803

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K00803

Determination of introduced cDNA(s)

  • J023036N01 - Rice Full-length cDNAs - Original: J023036N01

    full reading [+] show sequence

    Nucleotide sequence: J023036N01 - full reading
    GCGTTGACCA TCTTCCATTT CTTCCCCTCG CCAAGGCGAG GCCGCGAGAG 
    GGGTTTCGAA TTGGCGCCAA CCATTCCCCC CGATTCCCTC CTCCAGCTCT
    AGGGTTTCCG CCTCTCTCTG CGCTACGCCA TGGCGGGAGC CACCGCCGCC
    ACTCCGATGG ACATCGACGC CGCCGCGCCG CCGCCGGGGG CGGCCGCCAA
    GGGCAAGGCG CCTCTCTCCT CCACTCCCGG CGGTAGGGCC GCGCCCTGGG
    TCGAGAAGTA CCGCCCCCAA TCCCTCGGCG ATGTCGCCGC CCACCGCGAC
    ATCGTCGACA CCATTGATAG GCTTACAAAT GAGAACAGGC TTCCACATTT
    GTTGCTTTAT GGGCCTCCGG GCACTGGGAA AACATCGACA ATACTGGCCG
    TTGCAAGGAA GTTGTATGGG TCACAGTATG GCAACATGAT TCTTGAACTC
    AATGCATCAG ATGAGCGTGG TATTGATGTT GTAAGGCAGC AAATCCAAGA
    CTTCGCAAGT GCCCGCAGTC TCTCTTTCGG AGCAAAGCAA TCTGTTAAGA
    TGGTTCTATT GGATGAAGCA GATGCCATGA CCAAGGATGC ACAGTTTGCA
    TTGCGAAGAG TCATTGAGAA GCATACAAGG AGCACAAGGT TTGCGCTGAT
    ATGCAACCAT GTGAACAAAA TCATTCCAGC ACTGCAATCA AGGTGCACCA
    GGTTTAGATT TGCACCCCTT GATGGCACTC ATGTTAGGGA ACGTCTTAAA
    CATATAATAC AATCCGAGGG GCTTGATGTA GATGACGGTG GTTTGACAGC
    CCTTGTGCGG TTAAGTAATG GTGATATGAG GAAGGCTTTG AACATATTGC
    AGTCAACACA CATGGCATCT AAGCAAATAA CAGAGGAAGC TGTGTACCTT
    TGCACAGGAA ACCCCATGCC GAAAGACATT GAACAGATAG CATACTGGTT
    GCTGAATGAA TCATTTTCAA CCAGCTTCAA ATGTATATCT GATATGAAGA
    TGAGAAAAGG ACTGGCCTTG GTTGATATCA TACGGGAGGT CACTATGTTT
    GTGTTCAAAA TACAGATGCC ATCTGATGTA CGCATAAAGC TGATTAATGA
    TCTGGCTGAT ATCGAGTACC GGCTAAGCTT TGCTTGCAAT GACAAGTTAC
    AGCTGGGGGC GCTGATATCA ACTTTCACGG GTGCTCGCAC GGCTATGGTT
    GCTGCTGCCC ACTAATTTCA GCAAGGTGAT GATCATTTTG TTGCCCTTCA
    CTGCCACTTC AATCTGGAAA TGACGCGGCA ATGCTCGTTA TTATTATAAG
    CATGTGGTTA GCGTAAAGCT TAAAAGCATG GCGAGGAGAA ATTTTATCTG
    TAGGGTTTGT CTGCTCGACG TGCTAGCTTC TGGGACTCGG GAGTGCCTTG
    TAATTGAACT GTAACCGAAT TCTATCGGGT GTAACCGTGT AGGTGATGCA
    TGATGCGTGT AACGTTTTAT GCAGTAGAAA ATGTATTCAC AGTTCCAGCT
    C

    Gene models with high sequence identity

    1. AT1G77470.1 [+] show detail - replication factor C subunit 3
      E-value: 1e-147; Score: 520.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily P-loop containing nucleoside triphosphate hyd 5.2e-55
    superfamily DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal 2.1e-24
    HMMSmart ATPase, AAA+ type, core 1.4e-12
    HMMPanther REPLICATION FACTOR C / DNA POLYMERASE III GAM 3.9e-52
    Gene3D no description 2.9e-52
    Gene3D no description 8.7e-18
    Gene3D no description 9.2e-21
    HMMPfam Replication factor C 6.9e-24
    HMMPfam ATPase, AAA-type, core 1.6e-16

    See the detailed result >

    AT1G77470.1

    Model type
    Protein coding
    Short Description
    replication factor C subunit 3
    Curator Summary
    Encodes a protein with high homology to the Replication Factor C, Subunit 3 (RFC3) of yeast and other eukaryotes. rfc3 mutants are hypersensitive to salicylic acid and exhibit enhanced induction of PR genes and resistance against virulent oomycete Hyaloperonospora arabidopsidis Noco2. The enhanced pathogen resistance in the mutant is NPR1-independent.
    Computational Description
    replication factor C subunit 3 (RFC3); FUNCTIONS IN: in 6 functions; INVOLVED IN: negative regulation of defense response; LOCATED IN: DNA replication factor C complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Replication factor C (InterPro:IPR013748), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921); BEST Arabidopsis thaliana protein match is: ATPase family associated with various cellular activities (AAA) (TAIR:AT1G21690.1); Has 17584 Blast hits to 17541 proteins in 2810 species: Archae - 637; Bacteria - 9895; Metazoa - 902; Fungi - 991; Plants - 392; Viruses - 88; Other Eukaryotes - 4679 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR