GT478

CSHL Arabidopsis genetrap mutant lines

Original: GT478

Phenotypes

Morphological phenotypes

Original description

  • glossy leaves
Anatomical entity
/structure development stage		 Phenotypes
vascular leaf (PO:0009025)
  • high saturation (PATO:0001229)

Original: GT478

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25945261 [Map]; Strand: w
      • AT5G64920.1 - [+] show detail - COP1-interacting protein 8
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT478 - 3-prime edge 
    TGCCACGGCG TCGCACTGGT GCTATCACTG CAACAAACGC GTCGTCGTTG 
    ATACCTTACA TGACTTTGTC GTGTGCTGCG AAATGTAACA AAGGTTTCGT 
    CGAGTCAATT CAACCGACTC CCGCCGCTTA TTCTTCTCTG GCGACAACGC 
    ATCCAATATC CCCAAATCTC AATGTTGAAT ACTCCAGTAT TGGCTCGCAT 
    GTCCTCC

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25945408 [Map]; Strand: w
      • AT5G64920.1 - [+] show detail - COP1-interacting protein 8
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT478 - 5-prime edge 
    GGACATCGTG CAATTAATCG TCGGGTTTTC AGGCTTTCGG GTCCGGATTC 
    GGATCCGATA AGCCGATTAT GAGGATGGAG AAAATAAAAG AAAAAGGTCT 
    CTCTGTATTA TTATTATCGA ATTTTTAAGA CATTAGAGAA TCCTGCTCAT 
    TTACCCACTT GACCCACCCA CAATATCATA ATATTTTCTT CTATATATGA 
    TATCACCATC ATCATAAATT CATAATACTT ACAATTTAAT CAAACTGT

AT5G64920.1

Model type
Protein coding
Short Description
COP1-interacting protein 8
Curator Summary
Encodes a RING-H2 protein that interacts with the RING finger domain of COP1. CIP8 exhibits a strong interaction with the E2 ubiquitin conjugating enzyme AtUBC8 through its N-terminal domain and promotes ubiquitination in an E2-dependent fashion in vitro. It is possible that the AtUBC8-CIP8 module might interact with COP1 in vivo, thereby participating in proteasome-mediated degradation of HY5.
Computational Description
COP1-interacting protein 8 (CIP8); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G01980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR