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GT24181

CSHL Arabidopsis genetrap mutant lines

Original: GT24181

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT24181

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18192844 [Map]; Strand: c
      • AT3G49060.2 - [+] show detail - U-box domain-containing protein kinase family protein
        Distance: -852; Region: promoter
      • AT3G49060.1 - [+] show detail - U-box domain-containing protein kinase family protein
        Distance: -909; Region: promoter
      • AT3G49070.1 - [+] show detail - Protein of unknown function (DUF677)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT24181 - 5-prime edge 
    CTCACGCCTT TGCTTTGTTT ATATCCGGTC CGACTCTTTA AACTTTAAGA 
    TTTAAATCAA TCGGTTTAAG GAATAAATTA ACAAAAACAG TGTCTCGGCT 
    CGACGTTGCT GCCACAGGTA CTTACA

AT3G49060.1

Model type
Protein coding
Short Description
U-box domain-containing protein kinase family protein
Computational Description
U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), U box domain (InterPro:IPR003613), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT2G45910.1); Has 84033 Blast hits to 83330 proteins in 4034 species: Archae - 70; Bacteria - 7751; Metazoa - 31165; Fungi - 5115; Plants - 29189; Viruses - 207; Other Eukaryotes - 10536 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G49060.2

Model type
Protein coding
Short Description
U-box domain-containing protein kinase family protein
Computational Description
U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT2G45910.1).
Link
InterPro Scan - TAIR

AT3G49070.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF677)
Computational Description
Protein of unknown function (DUF677); INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT3G19330.1); Has 169 Blast hits to 169 proteins in 18 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 0; Plants - 155; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR