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GT23692

CSHL Arabidopsis genetrap mutant lines

Original: GT23692

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT23692

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5819139 [Map]; Strand: w
      • AT1G17010.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT23692 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCC TAATCAAGAT AAGCCTTTCC 
    TTTGAGTTCA CGGGAAAACA AGCCATTCAA GTAGTCTTTA GTTTTCAGGC 
    TTCTAAACTT TGCAGCCTCT TGTCTTTGAA CAAGGCTTCT CGCCGGACCA 
    ATTTCTTTAT CCATTCCCGT GTTGTGAAAT GTCGCAATGG AGAGCCTCTC 
    TTTCTCCAAG TTCACCATTG CCCGGTGCTC GATGCTTCGG TATGTCCCGT 
    TCGTTATGAT CTGCATTACA AACGGCCCAA CACCCATCAT CAAAATATTT 
    ATGACTAGCG ATTAGCTGCC ATAAAGTCTA TCAGGGTTTA GCCCGACCAA 
    ATTCATCAAA ACATCTATAT AGTATGGCTT ACCTCTAACA CGTCCCCAAC 
    ATTGACAATG AAAGCATTTT GGAGAGGTTT GACAAAAAAC CACTTGCCAT 
    TTTTCTTGAT TTGGAGACCG TCAACTTCAT TCACCTGCAA AAGTATGGTG 
    AGCCCGACTG CATCGGAATG CGGAATTAGA CCCGTAACCA GATTAGGTTG 
    TGGACACGGG GGATAGTAGT TCATCTCACT CGAC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5819228 [Map]; Strand: w
      • AT1G17010.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: 0; Region: exon4 (3UTR)
      • AT1G17020.1 - [+] show detail - senescence-related gene 1
        Distance: -978; Region: promoter
    Flanking Genome Sequence: GT23692 - 5-prime edge 
    GATGCTATGA GAATTGAAGG GAAGTGATAT CTTGTTTCCC AAGAAATTCT 
    GTTTTCTCCA ACTGGTCACT GTCGTGTTCA TATTCTGCTT TTACTTCTCT 
    CTTATGTCTT TGGTTCATCT CACTCGACCA AAAAAACGCC TGTGAATAAT 
    ACTTAATAAG CTCGTTCGTC TTCGTCAACA TACAAAAATA TCAACTACGT 
    AGTAATACCA CACCTTATTT ATTTAGACAC ATACAGTTCT TGTTTTTCTT 
    CTCACTCGAC C

AT1G17010.1

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding; INVOLVED IN: oxidation reduction, flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: senescence-related gene 1 (TAIR:AT1G17020.1); Has 8317 Blast hits to 8272 proteins in 989 species: Archae - 0; Bacteria - 1073; Metazoa - 106; Fungi - 910; Plants - 4938; Viruses - 0; Other Eukaryotes - 1290 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G17020.1

Model type
Protein coding
Short Description
senescence-related gene 1
Curator Summary
Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene.
Computational Description
senescence-related gene 1 (SRG1); CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G17010.1); Has 8560 Blast hits to 8517 proteins in 996 species: Archae - 0; Bacteria - 1133; Metazoa - 115; Fungi - 988; Plants - 4970; Viruses - 0; Other Eukaryotes - 1354 (source: NCBI BLink).
Link
InterPro Scan - TAIR