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GT22864

CSHL Arabidopsis genetrap mutant lines

Original: GT22864

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22864

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15557229 [Map]; Strand: c
      • AT4G32210.1 - [+] show detail - succinate dehydrogenase 3-2
        Distance: 0; Region: intron3 (CDS)
    2. Chromosome: 5; Position: 2980030 [Map]; Strand: w
      • AT5G09600.3 - [+] show detail - succinate dehydrogenase 3-1
        Distance: 0; Region: intron4 (CDS)
      • AT5G09600.1 - [+] show detail - succinate dehydrogenase 3-1
        Distance: 0; Region: intron3 (CDS)
      • AT5G09600.2 - [+] show detail - succinate dehydrogenase 3-1
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: GT22864 - 5-prime edge
    TTGGTACTGG TTTGGGGACT AACAATGCCA TTAGAGAGGA GAGAGAGGTA 
    AAATGACTTT GTCTACATTT TGTTTGATTT TTGCTTTTGT AATGTTTAAG
    AGCAGCTTAA CTTATCCTTT TTGCCTGGTG ATCCTTGTCT CGATTTTTCC
    AGAAGTCAAA ATCTACTGAA GCTGCAATTG TTGGTGCTCA ATTGACTCGA
    TCTTTCCGTG CTCTTGATGT GGGAACATCG AAACGATTGT TTTCTACAAT
    CTCAGGGGAT ATAAAGACAA CACAGGAGGA ACCAAAAATC AAAAGCTTTC
    GCCCTTCATC TCTCTCGACT ACTGTTTACC AGCCTCAGAT GAACTCCATG
    CTATCGATTT TCAACAGAAT CTCAGGGGTT TACTTGACCG GTGTCACTTT
    CGCTGGCTAC CTTCTCTACC TGAAGATGGG TATGATCTGC CTCACCTACC
    CGAGTTTCTA CCAAGTCCTT TACCATACAC AACAGCAACT TCCAGTCATC
    ACCTCGGTTA CTGCATTAGC CGCTATTTAT CATACTATCA AGAGTACTCA
    CTCACTCTTG ACCCATTAAA AACCTTTACC AAAGCTCTTT CGATGAAGCC
    GCCAAAGTCT CCAGTAAGAG TTTCTTTGAG ATGATTAATA AGGAGACAAG
    AAAACATTTG TTAAACTCTG TCTTGAAAAG GTAAAGATTT AGCACCTGTT
    TCTTTGGATT CGAGGCTTTT TTGGGGGTAT GTTTGTTGCT TTTCT

AT4G32210.1

Model type
Protein coding
Short Description
succinate dehydrogenase 3-2
Curator Summary
Encodes one of the membrane anchor subunits of the mitochondrial respiratory complex II. The protein is encoded by the nuclear genome but is imported into the mitochondrion. There are two genes that encode this protein, the other is SDH3-1.
Computational Description
succinate dehydrogenase 3-2 (SDH3-2); CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit (InterPro:IPR000701); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 3-1 (TAIR:AT5G09600.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09600.1

Model type
Protein coding
Short Description
succinate dehydrogenase 3-1
Curator Summary
Encodes one of the membrane anchor subunits of the mitochondrial respiratory complex II. The protein is encoded by the nuclear genome but is imported into the mitochondrion. There are two genes that encode this protein, the other is SDH3-2.
Computational Description
succinate dehydrogenase 3-1 (SDH3-1); CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit (InterPro:IPR000701); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 3-2 (TAIR:AT4G32210.1); Has 400 Blast hits to 400 proteins in 121 species: Archae - 0; Bacteria - 45; Metazoa - 67; Fungi - 61; Plants - 100; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09600.2

Model type
Protein coding
Short Description
succinate dehydrogenase 3-1
Curator Summary
Encodes one of the membrane anchor subunits of the mitochondrial respiratory complex II. The protein is encoded by the nuclear genome but is imported into the mitochondrion. There are two genes that encode this protein, the other is SDH3-2.
Computational Description
succinate dehydrogenase 3-1 (SDH3-1); CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit (InterPro:IPR000701); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 3-2 (TAIR:AT4G32210.1); Has 364 Blast hits to 364 proteins in 113 species: Archae - 0; Bacteria - 45; Metazoa - 67; Fungi - 62; Plants - 63; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09600.3

Model type
Protein coding
Short Description
succinate dehydrogenase 3-1
Curator Summary
Encodes one of the membrane anchor subunits of the mitochondrial respiratory complex II. The protein is encoded by the nuclear genome but is imported into the mitochondrion. There are two genes that encode this protein, the other is SDH3-2.
Computational Description
succinate dehydrogenase 3-1 (SDH3-1); CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit (InterPro:IPR000701); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 3-2 (TAIR:AT4G32210.1).
Link
InterPro Scan - TAIR