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GT22722

CSHL Arabidopsis genetrap mutant lines

Original: GT22722

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22722

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 99691 [Map]; Strand: w
      • AT5G01240.1 - [+] show detail - like AUXIN RESISTANT 1
        Distance: 0; Region: intron6 (CDS)
      • AT5G01240.2 - [+] show detail - like AUXIN RESISTANT 1
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: GT22722 - 5-prime edge 
    AACTAATTAT AGTTGGGATA TAAGTTATAA TTTCTTCTCC ATATACAGCA 
    TTTGTTGTGT TGCAATTTGC AAATATTAAA AAAAAAATGA ATTTTCCCTG 
    AAAATTTATG TTTCCTTCTT CTTTTTTAAA GACCAATCTC TTTTAGCTTC 
    TATATGGGCA GCTTTTGCCG GTTACTTTAG GTTCTGTCCT AAACGCACAA 
    ACAGACAAAA TCATTATTAC GGAATAAATA AAGACAAATT TACCAAAAAA 
    ATTCTATTTA CCTTTTTAAC ACACACTAGC TACTAGCTAC GGAACTCAAT 
    TCCTAACATT CTTTTTATTT TAGTAAATTT TACTCACAAA TATCTATCTC 
    ATCTTCAAGA GTACAACTAC GTAACGTAAC CACAGGGGTC GGACCCGGAC 
    GGCCAATCTC TGGTCGGACC CATAAATCCA CTGTAAAAAA CTTTTATGCC 
    ATTTCCTTTT ACATTTTATC TATAAAAAAA GTTATAAAAT TTTCAGGGAA 
    ATAATGCAGG CGATGGGGAA ACCAAGGAAG TTTAAAAGCA TCTACTTGAT 
    GGCAACTCTG TACGTCTTCA CATTAACGCT TCCGTCAGCC TCCGCCGTCT 
    ACGGGGCTTT CGGCGACCAA CTTCTCAACC ACTCAAACGC TTTCTCTCTC 
    CTCCCTAAAA CGCGTTTCCG GGACACCGCC TTTATCCTCA TGCTCATCCA 
    TCAGGTTCCT ATCACCCTAA CTCTCACTAT GTTACAGGTC TCACAAAAAT 
    TACACTATGC CATTAATGAT TGGTCCAAGT TA

AT5G01240.1

Model type
Protein coding
Short Description
like AUXIN RESISTANT 1
Curator Summary
Encodes LAX1 (LIKE AUXIN RESISTANT), a member of the AUX1 LAX family of auxin influx carriers. Required for the establishment of embryonic root cell organization.
Computational Description
like AUXIN RESISTANT 1 (LAX1); CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT2G38120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01240.2

Model type
Protein coding
Short Description
like AUXIN RESISTANT 1
Curator Summary
Encodes LAX1 (LIKE AUXIN RESISTANT), a member of the AUX1 LAX family of auxin influx carriers. Required for the establishment of embryonic root cell organization.
Computational Description
like AUXIN RESISTANT 1 (LAX1); FUNCTIONS IN: transporter activity; INVOLVED IN: amino acid transport, root cap development; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT2G38120.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR