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GT22680

CSHL Arabidopsis genetrap mutant lines

Original: GT22680

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT22680

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18492538 [Map]; Strand: w
      • AT4G39850.2 - [+] show detail - peroxisomal ABC transporter 1
        Distance: 0; Region: exon10 (CDS)
      • AT4G39850.3 - [+] show detail - peroxisomal ABC transporter 1
        Distance: 0; Region: exon10 (CDS)
      • AT4G39850.1 - [+] show detail - peroxisomal ABC transporter 1
        Distance: 0; Region: exon10 (CDS)
    Flanking Genome Sequence: GT22680 - 5-prime edge
    CTGATATGGA AGAACGCTTT GCCGCTAAGG TTCGAGCTAT GGGACACTTC 
    TTGCGTAACA ATCTCCCATC GTCCAGCGCT TGTTGCATTC CATGATGTTG
    TTCTGTCATT AGACGGTGAA GGAGGATGGA GTGTTCATTA CAAGAGGTTG
    GGATTGTTTC TTAACCATGT TTGTGAGAAT TATTAAAGTT TATTTTTATT
    TACTTATTAA AATGACTAAA CCTTCAGGGA TGACTCTGCC CTTCTGACGG
    ATGCTGAAAT TGATTCAGTG AAAAGTTCAG ATACAGATCG GCAAAATGAT
    GCGATGGTTG TTCAACGAGC GTTTGCTGCA GCTAGAAAGG TCTCAGCCGA
    AGTTTTATTT GTTTATTATA ATTTTCGTTG ACGATGGTTC TAACCTGGTT
    ACTCGGTGCT TTGTAGGAAT CTGCTACTAA TTCAAAGGCT CAGTCGTACC
    AGACACAGTT AATTGCAAGA TCACCTGTTG TAGATAAAAG TGTAGTGTTG
    CCTCGTTTTC CTCAACCTCA AACATCCCAA AGGGCTTTAC CATCAAGAGT
    AGCTGCAATG TTAAACGTGT TGGTGAGCTT GAGTTACTAG TGTGAATTTT
    ATTGTAGATA GCTGTACCAA TCATTCTTAA CTTAGATATC AATACACATG
    CTTTTTGCAG CTGCATTCAT ATATCCCCCT TTTTCTCTTC CATTCT

AT4G39850.1

Model type
Protein coding
Short Description
peroxisomal ABC transporter 1
Curator Summary
Encodes a peroxisomal protein of the ATP binding cassette (ABC) transporter class (PMP subfamily) with significant identity to the human X-linked adrenoleukodystrophy protein (ALDP). The gene product promotes germination and represses embryo dormancy. ABI3, ABA1, FUS3 and LEC1 are epistatic to this gene. Mutants accumulate fatty acyl CoA suggesting a defect in uptake of fatty acyl CoA into the peroxisome.
Computational Description
peroxisomal ABC transporter 1 (PXA1); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter, N-terminal (InterPro:IPR010509), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT1G54350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G39850.2

Model type
Protein coding
Short Description
peroxisomal ABC transporter 1
Curator Summary
Encodes a peroxisomal protein of the ATP binding cassette (ABC) transporter class (PMP subfamily) with significant identity to the human X-linked adrenoleukodystrophy protein (ALDP). The gene product promotes germination and represses embryo dormancy. ABI3, ABA1, FUS3 and LEC1 are epistatic to this gene. Mutants accumulate fatty acyl CoA suggesting a defect in uptake of fatty acyl CoA into the peroxisome.
Computational Description
peroxisomal ABC transporter 1 (PXA1); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter, N-terminal (InterPro:IPR010509), ABC transporter-like (InterPro:IPR003439), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT1G54350.1).
Link
InterPro Scan - TAIR

AT4G39850.3

Model type
Protein coding
Short Description
peroxisomal ABC transporter 1
Curator Summary
Encodes a peroxisomal protein of the ATP binding cassette (ABC) transporter class (PMP subfamily) with significant identity to the human X-linked adrenoleukodystrophy protein (ALDP). The gene product promotes germination and represses embryo dormancy. ABI3, ABA1, FUS3 and LEC1 are epistatic to this gene. Mutants accumulate fatty acyl CoA suggesting a defect in uptake of fatty acyl CoA into the peroxisome.
Computational Description
peroxisomal ABC transporter 1 (PXA1); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, N-terminal (InterPro:IPR010509), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT1G54350.1).
Link
InterPro Scan - TAIR