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GT20420

CSHL Arabidopsis genetrap mutant lines

Original: GT20420

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20420

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 15556754 [Map]; Strand: c
      • AT4G32210.1 - [+] show detail - succinate dehydrogenase 3-2
        Distance: 0; Region: exon4 (CDS)
    2. Chromosome: 5; Position: 2980505 [Map]; Strand: w
      • AT5G09600.3 - [+] show detail - succinate dehydrogenase 3-1
        Distance: 0; Region: exon5 (CDS)
      • AT5G09600.1 - [+] show detail - succinate dehydrogenase 3-1
        Distance: 0; Region: exon4 (CDS)
      • AT5G09600.2 - [+] show detail - succinate dehydrogenase 3-1
        Distance: 0; Region: exon5 (CDS)
      • AT5G09610.1 - [+] show detail - pumilio 21
        Distance: -651; Region: promoter
    Flanking Genome Sequence: GT20420 - 5-prime edge 
    TACTTTATCC CTGCTTCCAG TCATCACTCT CGGTTACTGC ATTAGCCGCT 
    ATTTATCATA CTATCAAGAG TACTCACTCA CTCTTGACCC ATTAAAAACC 
    TTTACCAAAG CTCTTTCGAT GAAGCCGCCA AAGTCTCCAG TAAGAGTTTC 
    TTTGAGATGA TTAATAAGGA GACAAGAAAA CATTTGTTAA ACTCTGTCTT 
    GAAAAGGTAA AGATTTAGCA CCTGTTTCTT TGGATTCGAG GCTTTTTTGG 
    GGGTATGTTT GTTGCTTTTC TTCTCTCTCG

AT4G32210.1

Model type
Protein coding
Short Description
succinate dehydrogenase 3-2
Curator Summary
Encodes one of the membrane anchor subunits of the mitochondrial respiratory complex II. The protein is encoded by the nuclear genome but is imported into the mitochondrion. There are two genes that encode this protein, the other is SDH3-1.
Computational Description
succinate dehydrogenase 3-2 (SDH3-2); CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit (InterPro:IPR000701); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 3-1 (TAIR:AT5G09600.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09600.1

Model type
Protein coding
Short Description
succinate dehydrogenase 3-1
Curator Summary
Encodes one of the membrane anchor subunits of the mitochondrial respiratory complex II. The protein is encoded by the nuclear genome but is imported into the mitochondrion. There are two genes that encode this protein, the other is SDH3-2.
Computational Description
succinate dehydrogenase 3-1 (SDH3-1); CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit (InterPro:IPR000701); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 3-2 (TAIR:AT4G32210.1); Has 400 Blast hits to 400 proteins in 121 species: Archae - 0; Bacteria - 45; Metazoa - 67; Fungi - 61; Plants - 100; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09600.2

Model type
Protein coding
Short Description
succinate dehydrogenase 3-1
Curator Summary
Encodes one of the membrane anchor subunits of the mitochondrial respiratory complex II. The protein is encoded by the nuclear genome but is imported into the mitochondrion. There are two genes that encode this protein, the other is SDH3-2.
Computational Description
succinate dehydrogenase 3-1 (SDH3-1); CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit (InterPro:IPR000701); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 3-2 (TAIR:AT4G32210.1); Has 364 Blast hits to 364 proteins in 113 species: Archae - 0; Bacteria - 45; Metazoa - 67; Fungi - 62; Plants - 63; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G09600.3

Model type
Protein coding
Short Description
succinate dehydrogenase 3-1
Curator Summary
Encodes one of the membrane anchor subunits of the mitochondrial respiratory complex II. The protein is encoded by the nuclear genome but is imported into the mitochondrion. There are two genes that encode this protein, the other is SDH3-2.
Computational Description
succinate dehydrogenase 3-1 (SDH3-1); CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit (InterPro:IPR000701); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 3-2 (TAIR:AT4G32210.1).
Link
InterPro Scan - TAIR

AT5G09610.1

Model type
Protein coding
Short Description
pumilio 21
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 21 (PUM21); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 16 (TAIR:AT5G59280.1); Has 4825 Blast hits to 2764 proteins in 231 species: Archae - 2; Bacteria - 5; Metazoa - 477; Fungi - 433; Plants - 446; Viruses - 4; Other Eukaryotes - 3458 (source: NCBI BLink).
Link
InterPro Scan - TAIR