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GT18973

CSHL Arabidopsis genetrap mutant lines

Original: GT18973

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18973

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3374547 [Map]; Strand: c
      • AT5G10690.1 - [+] show detail - pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing pro...
        Distance: 0; Region: exon11 (CDS)
    Flanking Genome Sequence: GT18973 - 5-prime edge 
    TCCATCCTAC TTTATCCCCT ACATTCCACC ATCTCCAAGA GGAGTCCCTC 
    AGATCGAAGT GACATTTGAC ATTGATGCCA ATGGCATTGT CACTGTTTCC 
    GCCAAGGACA AGACGACTGG TAAAGTACAA CAGATCACAA TCCGATCCTC 
    TGAGTGTTGC GCCTTCCAAG ACGAGCACCA TCAATTCCAA ATGAGTTGCT 
    ACTGATACAG ATTTAGTTCT TTCAATATAT TCACTTTTGT CAGAAAGAAA 
    ATGAACAAGA AACAAAACCT TGTTCCCTAA CCTTGTTCTT CTTCGAGTTC 
    TCTTGCAGCC TATGCTGTTG GAGATTCCTT CTTCCCTTGC ACCCCTTCCT 
    TCTTTGTTCC TTCCTCTGGT AATTCTTCTA TTTGAGCCTT TGTTTCGGCT 
    GTTTCTTCTT TCACTCTGCT GCTTTCGCTC TCTTCCTCTT TAACTTCTGC 
    TTCTTCCTGT TCCT

AT5G10690.1

Model type
Protein coding
Short Description
pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein
Computational Description
pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G12775.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR