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GT18675

CSHL Arabidopsis genetrap mutant lines

Original: GT18675

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18675

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 117583 [Map]; Strand: w
      • AT2G01190.1 - [+] show detail - Octicosapeptide/Phox/Bem1p family protein
        Distance: 0; Region: exon2 (3UTR)
      • AT2G01200.1 - [+] show detail - indole-3-acetic acid inducible 32
        Distance: -434; Region: promoter
      • AT2G01200.2 - [+] show detail - indole-3-acetic acid inducible 32
        Distance: -435; Region: promoter
    Flanking Genome Sequence: GT18675 - 5-prime edge 
    CCCTGCTTCT TGGTGGGATT TACATTATAT AGGTGCAATT GATACATGGA 
    GTGCTTTACC ATTTTCCTGG ATCTTATATC ATATTATTAT CATTCATTTC 
    ATTTTGTAAA TGTATCACTT TTTTGATCAT CATCTCTCTA TCTTGTTTTT 
    TCAAGAGACT TTGAAGGCTA TAATATTGTT CAGAAAGATT CTGAAATGTT 
    ATGTATAACA TTTAATATTT GGAAGAATGT ATGTCTGGCT TCTTGCTATC 
    CATGGGAGCG TAGGGGCAGA TATTAAAACA TGTGTGTGGT CTTGCAAAAG 
    AACACACAAA C

AT2G01190.1

Model type
Protein coding
Short Description
Octicosapeptide/Phox/Bem1p family protein
Computational Description
Octicosapeptide/Phox/Bem1p family protein; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: Octicosapeptide/Phox/Bem1p family protein (TAIR:AT3G18230.1); Has 5347 Blast hits to 4615 proteins in 344 species: Archae - 4; Bacteria - 100; Metazoa - 2308; Fungi - 1293; Plants - 931; Viruses - 29; Other Eukaryotes - 682 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01200.1

Model type
Protein coding
Short Description
indole-3-acetic acid inducible 32
Curator Summary
Belongs to auxin inducible gene family.
Computational Description
indole-3-acetic acid inducible 32 (IAA32); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, embryo development ending in seed dormancy, pollen development; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 34 (TAIR:AT1G15050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01200.2

Model type
Protein coding
Short Description
indole-3-acetic acid inducible 32
Curator Summary
Belongs to auxin inducible gene family.
Computational Description
indole-3-acetic acid inducible 32 (IAA32); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, embryo development ending in seed dormancy, pollen development; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 34 (TAIR:AT1G15050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR