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GT18662

CSHL Arabidopsis genetrap mutant lines

Original: GT18662

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18662

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 98313 [Map]; Strand: w
      • AT5G01240.1 - [+] show detail - like AUXIN RESISTANT 1
        Distance: 0; Region: exon2 (CDS)
      • AT5G01240.2 - [+] show detail - like AUXIN RESISTANT 1
        Distance: -220; Region: promoter
    Flanking Genome Sequence: GT18662 - 5-prime edge 
    CTTTCTCTCT CTCGACATAG TAGTCTCCGG GGAGGATGAG GTGGCCGGTA 
    GAAAAGTGGA AGATTCAGCG GCGGAGGAGG ATATTGACGG CAACGGGGGC 
    AATGGATTTA GTATGAAGAG CTTCCTCTGG CATGGCGGGT CCGCTTGGGA 
    CGCCTGGTTT AGCTGTGCAT CAAATCAAGT AAGTACAATT TCGATAATGA 
    ATAATTCATC TAGTAGTAAT ATTTACTATA AGAAAACAAA TGTTTCTTTA 
    TTATAATAAG ACCAAATTAC TCTTTTTTCG TTTGTCCTAA AGTTTTTTTT 
    TAATATTCTT TCATAAAACA TTCTTGAAAT AAATAACAAC TTAAGTTATA 
    AAAACAAAAA TATATGGTTG CAGGTGGCAC AAGTGCTGTT GACGCTGCCG 
    TATTCGTTCT CGCAGTTGGG AATGTTATCA GGAATATTGC TTCAAATATT 
    CTATGGGTTA ATGGGATCTT GGACTGCTTA TCTCATCAGT GTTTTANCCC 
    TCTAAGTATC GTGCCCGTAT GGAGAAACAA GAAGCCAAAT CCTTCAAAAA 
    CCACGTTATT CAAGTAAATT CTTCCTTATT TTAGTTTAGT GACATATTCG 
    AATTTGATCT CACTTTTAGA TTTACTAAAT TGAATTGCAT GTTTGTTTTG 
    TTTTCTTAAC ACAAAAAAAA TAAAATAAAA AAATGGGAAG TGGTTTGAAG 
    TGCTTGATGG GCTGCTGGGT CCGTACTGGA AAGC

AT5G01240.1

Model type
Protein coding
Short Description
like AUXIN RESISTANT 1
Curator Summary
Encodes LAX1 (LIKE AUXIN RESISTANT), a member of the AUX1 LAX family of auxin influx carriers. Required for the establishment of embryonic root cell organization.
Computational Description
like AUXIN RESISTANT 1 (LAX1); CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT2G38120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01240.2

Model type
Protein coding
Short Description
like AUXIN RESISTANT 1
Curator Summary
Encodes LAX1 (LIKE AUXIN RESISTANT), a member of the AUX1 LAX family of auxin influx carriers. Required for the establishment of embryonic root cell organization.
Computational Description
like AUXIN RESISTANT 1 (LAX1); FUNCTIONS IN: transporter activity; INVOLVED IN: amino acid transport, root cap development; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT2G38120.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR